Yi D D - OmicsDI

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Unknown (4554)
Transcriptomics (581)
Proteomics (292)
Genomics (132)
Metabolomics (90)
Multiomics (8)
Models (1)

Organisms

Homo sapiens (361)
Mus musculus (258)
Arabidopsis thaliana (24)
Rattus norvegicus (23)
Saccharomyces cerevisiae (14)
Danio rerio (13)
Daphnia pulex (9)
Escherichia coli (8)
Drosophila melanogaster (7)
Xenopus laevis (6)
Zea mays (5)
Gallus gallus (4)
Candida albicans (4)
Sus scrofa (4)
Citrus limonia (3)
Pan troglodytes (3)
Neurospora crassa (3)
Oryza sativa Japonica Group (3)
Macaca mulatta (2)
Candidozyma auris (1)
Chamaelirium luteum (1)
Dunaliella tertiolecta (1)
Serendipita vermifera (1)
Oreochromis niloticus (1)
Bdellovibrio bacteriovorus HD100 (1)
Megalobrama amblycephala (1)
Aspergillus nidulans FGSC A4 (1)
Oryza rufipogon (1)
Streptomyces bingchenggensis (1)
Proteus mirabilis (1)

Organisms

Halobacterium salinarum NRC-1 (32)
Mus musculus (6)
Homo sapiens (1)

Repository

biostudies-arrayexpress (598)
iProX (93)
pride (85)
MetaboLights (83)
MassIVE (51)
EGA (46)
PeptideAtlas (41)
ENA (41)
geo (30)
jPOST (18)
GNPS (7)
PAXDB (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (24)
Others (10)
Epithelial cell (8)
Colon (4)
Whole body (4)
Brain (3)
Fibroblast (3)
Permanent cell line cell (3)
Plant cell (3)
Blood plasma (2)
HeLa cell (2)
Heart (2)
Hepatocyte (2)
Pancreatic endocrine cell (2)
Seed (2)
Skeletal muscle (2)
Brain (1)
A549-CR cell (1)
Aortic endothelial cell (1)
B-cell lymphoma cell (1)
Blood (1)
Blood serum (1)
Cardiocyte (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Chromophobe renal cell carcinoma cell (1)
Cornea (1)
Cotyledon (1)
Duodenum (1)
Early embryonic cell (1)

Disease

Colon cancer (5)
Cervix carcinoma (3)
Prostate carcinoma (2)
Prostate adenocarcinoma (2)
Type 2 diabetes mellitus (2)
Bacterial infectious disease (1)
HPV positive (1)
Endometrioid carcinoma (1)
Androgen-dependent prostate cancer (1)
HIV (1)
Squamous cell carcinoma (1)
Breast cancer (1)
Cardiomyopathy (1)
Chromophobe renal cell carcinoma (1)
Chronic kidney disease (1)
Disease free (1)
Disease of metabolism (1)
Idiopathic pulmonary fibrosis (1)
Influenza (1)
Intestinal disease (1)
Kidney disease (1)
Liver cancer (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Mulibrey nanism (1)
Pancreatic ductal adenocarcinoma (1)
Parkinson's disease (1)
Renal cell carcinoma (1)
Severe acute respiratory syndrome (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (85)
Mass spectrometry (52)
Shotgun proteomics (37)
Mass spectrometry assay (27)
Affinity purification coupled with mass spectrometry proteomics (12)
Bottom-up proteomics (12)
Gel-based experiment (10)
NMR spectroscopy (5)
Data-dependent acquisition (5)
Top-down proteomics (5)
Data-independent acquisition (3)
SWATH MS (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
DiaPASEF (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive Plus (9)
Illumina HiSeq 2000 (8)
Illumina NovaSeq 6000 (7)
Orbitrap Fusion Lumos (7)
LTQ (7)
Q Exactive (6)
BGISEQ-500 (5)
LTQ Orbitrap Elite (4)
Orbitrap Eclipse (4)
Orbitrap Exploris 480 (4)
Orbitrap Fusion (4)
Q Exactive HF (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Agilent 5975C Series GC/MSD (2)
LTQ FT (2)
MaXis (2)
TripleTOF 6600 (2)
LTQ Orbitrap Velos (2)
Q Exactive HF-X (2)
LTQ Orbitrap (2)
10X Genomics Chromium Single Cell Kit (1)
BGIseq500 (1)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
NextSeq 500 (1)
Impact (1)
LTQ XL (1)

Publication Date

2010 (101)
2013 (97)
2012 (84)
2014 (79)
2015 (75)
2011 (68)
2008 (62)
2023 (57)
2025 (55)
2026 (47)
2022 (43)
2024 (38)
2016 (38)
2021 (36)
2020 (23)
2009 (21)
2019 (18)
2017 (17)
2006 (17)
2018 (11)
2007 (11)
2004 (4)
2005 (1)

UNIPROT ID/AC

O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
Q15485 (1)
14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5A_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABD_HUMAN (1)
3BHS1_HUMAN (1)
3HIDH_HUMAN (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (4)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16704 (20)
CHEBI:30769 (20)
CHEBI:17368 (19)
CHEBI:17568 (19)
CHEBI:15756 (17)
CHEBI:15428 (16)
CHEBI:16335 (16)
CHEBI:15354 (15)
CHEBI:15891 (15)
CHEBI:16708 (15)
CHEBI:17154 (15)
CHEBI:17351 (15)
CHEBI:17562 (15)
CHEBI:17596 (15)
CHEBI:17750 (15)
CHEBI:30746 (15)
CHEBI:32816 (15)
CHEBI:15741 (14)
CHEBI:15971 (14)
CHEBI:16040 (14)
CHEBI:16449 (14)
CHEBI:16467 (14)
CHEBI:16566 (14)
CHEBI:17992 (14)
CHEBI:16196 (13)
CHEBI:16393 (13)
CHEBI:16643 (13)
CHEBI:16750 (13)
CHEBI:18132 (1)
CHEBI:506227 (1)

Metabolite Name

Hypoxanthine (23)
Adenosine (22)
Uridine (19)
Adenine (18)
Creatine (18)
Cytidine (17)
L-Tyrosine (17)
Betaine (16)
Uracil (16)
Inosine (15)
L-Phenylalanine (15)
Taurine (15)
Uric acid (15)
Choline (14)
Creatinine (14)
L-Arginine (14)
L-Glutamine (14)
Thiamine (14)
Azelaic acid (13)
Cytosine (13)
Pantothenic acid (13)
Pyridoxine (13)
Trigonelline (13)
Citric acid (12)
Deoxycholic acid (12)
Guanine (12)
L-Histidine (12)
L-Proline (12)
Oleamide (12)
Sucrose (12)

First Public Date

2014 (36)
2025 (2)
2026 (1)
2024 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (4)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
Department of Pathology and Cell Biology and Institute for Cancer Genetics Herbert Irving Comprehensive Cancer Vagelos College of Physicians & Surgeons Columbia University (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical School (2)
State Key Lab of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences, Beijing 100101, China Chaoyang District, Beichen West Road, Campus #1, No. 2 (2)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
Associate professor, School of Biological Sciences, Seoul National University (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Beijing Geriatric Healthcare and Disease Prevention Center, Xuanwu Hospital, Capital Medical University, Beijing, China. (1)
CAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Carolin Daniel Helmholtz Zentrum München German Research Center for Environmental Health Institute of Diabetes Research Young Investigator Group Immune Tolerance in Diabetes Ingolstädter Landstrasse 1 85764 München-Neuherberg (1)
Centre for Biologics Evaluation, Biologics and Genetic Therapies Directorate, Health Canada, Canada (1)
Children's Hospital of Fudan University, National Children's Medical Center, and Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China (1)
Children's Hospital of Phildelphia and University of Pennsylvania (1)
Colorado State University, Department of Animal Science (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Cardiology, Shanghai East Hospital, Tongji University School of Medicine, No. 150 Jimo Road, Shanghai 200120, China. (1)
Department of Cell Biology and Physiology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. (1)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (1)
Department of Clinical Laboratory, National Cancer Center/ National Clinical Research Center for Cancer/ Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, P.R.China (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv 69978, Israel (1)
Department of Medical Oncology, Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University, Guangzhou 510060, P. R. China (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea (1)

IsPrivate

False (1)

Modification

Not available (1)

Study type

Transcription profiling by array (369)
RNA-seq of coding RNA (70)
Unknown experiment type (33)
ChIP-seq (30)
RNA-seq of non coding RNA (17)
Methylation profiling by high throughput sequencing (15)
Other (13)
ChIP-chip by tiling array (10)
Comparative genomic hybridization by array (10)
Methylation profiling by array (6)
Transcription profiling by tiling array (4)
RNA-seq of coding RNA from single cells (4)
ChIP-chip by array (3)
RNA-seq of total RNA (3)
RNAi profiling by array (2)
MicroRNA profiling by array (2)
RIP-chip by array (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Proteomic profiling by array (1)

Release Date

2025 (732)
2022 (585)
2024 (552)
2023 (541)
2021 (477)
2020 (317)
2019 (257)
2018 (218)
2017 (195)
2015 (184)
2013 (166)
2014 (164)
2016 (153)
2010 (130)
2012 (128)
2011 (101)
2026 (100)
2009 (53)
2008 (53)
2007 (20)
2006 (7)
2005 (6)
2004 (6)
2002 (2)
2003 (1)
2001 (1)
1996 (1)

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High-density deletion bin map of wheat D genome

A NimbleGen array containing both gene-based and RJM repeat junction probe sequences derived from Ae. Tauschii was developed and used to map the Chinese Spring nullisomic-tetrasomic lines and deletion bin lines of the D genome chromosomes. The NimbleGen array was hybridized in duplicate with Cy3 lab...

ORGANISM(S): Aegilops tauschii

2015-07-22 | E-GEOD-71190 | biostudies-arrayexpress

Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts

Most eukaryotic genes express mRNAs with alternative polyadenylation sites at their 3’ ends. Here we show that polyadenylated 3’ termini in three yeast species (S. cerevisiae, K. lactis, D. hansenii) are remarkably heterogeneous. Instead of a few discrete 3’ ends, the average yeast gene has an “en...

ORGANISM(S): Saccharomyces cerevisiae

2013-07-03 | E-GEOD-47661 | biostudies-arrayexpress

Association of Vitamin D Levels With Outcome in Patients With Melanoma After Adjustment For C-Reactive Protein.

Not available

S-EPMC4966337 | biostudies-literature

The effect of vitamin D supplementation on tumorigenesis in a thioacetamide (TAA)-induced rat intrahepatic cholangiocarcinoma model

In this study, we investigated the effect of vitamin D supplementation on tumorigenesis in a thioacetamide (TAA)-induced rat intrahepatic cholangiocarcinoma model as vitamin D is known to have a spectrum of anticancer activities. Using PET, we found that tumor formation and progression were suppress...

ORGANISM(S): Rattus norvegicus

2015-08-01 | E-GEOD-48961 | biostudies-arrayexpress

Development of mRNA expression signatures for Nao Yi Kang decoction in treating intracerebral hemorrhage

PRJNA1171321 | ENA

Characterization of GMPP from Dendrobium huoshanense yielding GDP-D-mannose.

Not available

S-EPMC7988358 | biostudies-literature

Circulatory 25(OH)D and 1,25(OH)₂D as differential biomarkers between multiple system atrophy and Parkinson's disease patients.

Not available

S-EPMC8477135 | biostudies-literature

Sodium intake in a cross-sectional, representative sample of New York City adults.

Not available