Yi R R - OmicsDI

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Unknown (4068)
Transcriptomics (442)
Proteomics (246)
Genomics (95)
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Organisms

Homo sapiens (291)
Mus musculus (200)
Rattus norvegicus (13)
Arabidopsis thaliana (12)
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Saccharomyces cerevisiae (7)
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Aegilops tauschii (1)
Panicum virgatum (1)

Organisms

Halobacterium salinarum NRC-1 (32)
marine Metazoa environmental sample (1)
Mus (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (435)
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pride (85)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (85)
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Gel-based experiment (10)
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Illumina HiSeq 2000, ILLUMINA (2)
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SRM/MRM (2)
Top-down proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
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HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (28)
Liquid Chromatography MS - negative - reverse phase (27)
Liquid Chromatography MS - positive - hilic (12)
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Publication Date

2010 (81)
2012 (68)
2013 (59)
2008 (55)
2014 (53)
2015 (51)
2011 (47)
2023 (46)
2025 (44)
2024 (42)
2022 (41)
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2021 (36)
2016 (33)
2020 (20)
2009 (17)
2006 (17)
2018 (13)
2019 (11)
2017 (10)
2007 (10)
2004 (4)
2005 (3)

UNIPROT ID/AC

P06208-2 (3)
Q0250 (2)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
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A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16704 (19)
CHEBI:17568 (19)
CHEBI:17368 (18)
CHEBI:15756 (17)
CHEBI:30769 (17)
CHEBI:15354 (16)
CHEBI:17154 (16)
CHEBI:15971 (15)
CHEBI:16040 (15)
CHEBI:16566 (15)
CHEBI:17750 (15)
CHEBI:15891 (14)
CHEBI:16335 (14)
CHEBI:16393 (14)
CHEBI:16467 (14)
CHEBI:17562 (14)
CHEBI:17596 (14)
CHEBI:17858 (14)
CHEBI:32816 (14)
CHEBI:55328 (14)
CHEBI:15428 (13)
CHEBI:16411 (13)
CHEBI:16450 (13)
CHEBI:16525 (13)
CHEBI:16708 (13)
CHEBI:16750 (13)
CHEBI:16919 (13)
CHEBI:17203 (13)
CHEBI:17351 (13)
CHEBI:17509 (13)

Metabolite Name

Hypoxanthine (25)
Adenosine (22)
Uracil (22)
Adenine (19)
Betaine (18)
Choline (18)
Creatine (18)
L-Proline (18)
Uridine (18)
Creatinine (16)
Cytidine (16)
Cytosine (16)
L-Histidine (16)
L-Tyrosine (15)
Palmitic acid (15)
Uric acid (15)
Guanine (14)
L-Arginine (14)
L-Phenylalanine (14)
Sphinganine (14)
Urocanic acid (14)
Cholic acid (13)
L-Carnitine (13)
L-Serine (13)
L-Valine (13)
Pantothenic acid (13)
Phytosphingosine (13)
Taurine (13)
Thiamine (13)
Arachidonic acid (12)

First Public Date

2014 (33)
2025 (3)
2021 (1)
2019 (1)

Modelling Approach

Population model (1)

Lab affiliation

Proteomics (4)
Seoul National University (3)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Department of Pathology and Cell Biology and Institute for Cancer Genetics Herbert Irving Comprehensive Cancer Vagelos College of Physicians & Surgeons Columbia University (2)
ETH Zurich (2)
Institute of Molecular Medicine and Cell Research, University Freiburg (2)
Sun Yat-sen University (2)
Amgen Inc. (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1GA, UK (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Capital Institute of Pediatrics (1)
Catholic University of Leuven, Laboratory of Clinical and Experimental Endocrinology, Leuven, Belgium (1)
Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
Chengdu University of Traditional Chinese Medicine (1)
City University of Hong Kong (1)
College of Animal Science and Technology, China Agricultural University, Beijing 100193, China (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Biochemistry Stanford Cancer Institute Stanford University Stanford, CA 94305, USA (1)
Department of Biochemistry University of Cambridge (1)
Department of Biochemistry, University of Cambridge (1)
Department of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Chemical Biology College of Chemistry and Molecular Engineering Peking University (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, and Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education (1)
Department of Medical Oncology, Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University, Guangzhou 510060, P. R. China (1)

IsPrivate

False (1)

Submitter Keywords

COVID-19 (1)

Modification

Not available (5)

Study type

Transcription profiling by array (278)
RNA-seq of coding RNA (41)
Unknown experiment type (34)
ChIP-seq (16)
Comparative genomic hybridization by array (13)
RNA-seq of non coding RNA (11)
Other (9)
ChIP-chip by tiling array (6)
Methylation profiling by high throughput sequencing (5)
Methylation profiling by array (4)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (2)
RIP-chip by array (1)
RNAi profiling by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (661)
2022 (545)
2023 (515)
2024 (472)
2021 (417)
2020 (283)
2018 (218)
2019 (203)
2017 (158)
2016 (156)
2015 (156)
2014 (136)
2013 (114)
2010 (101)
2012 (93)
2026 (91)
2011 (75)
2008 (42)
2009 (31)
2007 (15)
2006 (7)
2005 (5)
2004 (3)
2003 (1)
2002 (1)
2001 (1)
1996 (1)
1994 (1)

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MRE11-RAD50-NBS1 activates Fanconi Anemia R-loop suppression at transcription-replication conflicts

Rad50 is a component of the conserved MRE11-RAD50-NBS1 (MRN) complex, which functions in genome stability and the cell’s ability to deal with stalled DNA replication forks. We identified Rad50 as a factor important for R-loop tolerance and thus mapped DNA:RNA hybrids in Rad50KO cells and compare the...

ORGANISM(S): Saccharomyces cerevisiae

2019-10-31 | E-MTAB-7885 | biostudies-arrayexpress

(R,R)-4,4'-Dibromo-2,2'-[cyclo-hexane-1,2-diylbis(nitrilo-methyl-idyne)]diphenol.

Not available

S-EPMC2971247 | biostudies-literature

Global coupling of R-loop dynamics with RNA polymerase II modulates gene expression and early development of Drosophila.

Not available

S-EPMC11602159 | biostudies-literature

Hypolipidaemic and Insulin Secretagogue Activities of (R)-(-)-Carvone.

Not available

S-EPMC7785269 | biostudies-literature

Potential adaptive habitats for the narrowly distributed and rare bamboo species Chimonobambusa tumidissinoda J. R. Xue & T. P. Yi ex Ohrnb. under future climate change in China.

Not available

S-EPMC11402478 | biostudies-literature

Halobacterium NRC-1 General transcription factor perturbation

Halobacterium cells, specified general transcription factor knock-out strains or plasmid expressed 6-His tagged general transcription factor strains, were grown to mid-log phase. RNA extractions were performed using the Stratagene Absolutely RNA Miniprep Kit and RNA quality checked with the Agilent...

ORGANISM(S): Halobacterium sp. NRC-1

2010-05-27 | E-GEOD-7713 | biostudies-arrayexpress

Crystallographic characterization of the nitric oxide derivative of R-state human hemoglobin.

Not available

S-EPMC4059358 | biostudies-literature

Structure of human R-state aquomethemoglobin at 2.0 A resolution.

Not available

S-EPMC3107133 | biostudies-literature

Multicenter Evaluation of the Xpert Carba-R Assay for Detection and Identification of Carbapenemase Genes in Sputum Specimens.

Not available

S-EPMC7448655 | biostudies-literature

Simple-Structured OLEDs Incorporating Undoped Phosphorescent Emitters Within Non-Exciplex Forming Interfaces: Towards Ultraslow Efficiency Roll-Off and Low Driving Voltage for Indoor R/G/B Illumination.