Yong A A - OmicsDI

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Unknown (7050)
Transcriptomics (454)
Proteomics (381)
Genomics (109)
Metabolomics (38)
Models (16)
Multiomics (13)
Genomic (1)
Other (1)

Organisms

Homo sapiens (431)
Mus musculus (196)
Danio rerio (23)
Arabidopsis thaliana (21)
Rattus norvegicus (17)
Drosophila melanogaster (7)
Oryza sativa (7)
Gallus gallus (5)
Pseudomonas aeruginosa PAO1 (5)
cellular organisms (4)
Zika virus (4)
Bacillus subtilis (4)
Oryza sativa Indica Group (3)
Clostridium acetobutylicum (3)
Sus scrofa (3)
Hordeum vulgare (3)
Streptomyces chattanoogensis (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (2)
Rhodococcus jostii RHA1 (2)
Glycine soja (2)
Capsicum annuum (2)
Bemisia tabaci (2)
Gossypium hirsutum (2)
Macaca mulatta (2)
Bos taurus (2)
Pseudomonas putida KT2440 (2)
Glycine max (2)
Alphainfluenzavirus (1)
Eukaryota (1)
Vibrio vulnificus (1)

Organisms

Mus musculus (12)
Homo sapiens (5)
Streptococcus oralis (1)
human feces metagenome (1)
Caenorhabditis elegans (1)
Macaca mulatta (1)
Arabidopsis thaliana (1)
Solanum lycopersicum (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (487)
iProX (175)
pride (135)
EGA (46)
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ENA (29)
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BioModels (16)
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geo (4)
dbGaP (1)
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Tissue

Cell culture (46)
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Blood plasma (8)
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Blood serum (5)
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Plasma Non-glyco (3)
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Bone marrow (2)
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Cell line cell (2)
Colonic mucosa (2)
Endospore (2)
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Heart (2)
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Root (2)
Spinal cord (2)
Urine (2)
Whole body (2)
Aorta thoracica smooth muscle (1)
Bacterial protein (1)
Blood (1)

Disease

Disease free (8)
Osteosarcoma (6)
Lung cancer (2)
Normal (2)
Breast cancer (2)
Colon cancer (2)
Multiple sclerosis (2)
Chronic myelogenous leukemia (1)
Gastric cancer (1)
Not Available (1)
Adult hepatocellular carcinoma (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
Brain ischemia (1)
Cardiovascular system disease (1)
Cutaneous malignant melanoma 1 (1)
Cystic fibrosis (1)
Malignant neoplasm of ovary (1)
Muscular dystrophy (1)
Parkinson's disease (1)
Progeria (1)
Prostate adenocarcinoma (1)
Salmonellosis (1)
Systemic lupus erythematosus (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (135)
Shotgun proteomics (68)
Gel-based experiment (21)
Mass spectrometry (20)
Affinity purification coupled with mass spectrometry proteomics (18)
Bottom-up proteomics (16)
Mass spectrometry assay (9)
Data-dependent acquisition (9)
Data-independent acquisition (5)
DiaPASEF (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina HumanOmni5-Quad and exome sequencing, ILLUMINA (1)
All-ion fragmentation (1)

Instrument Platform

LTQ Orbitrap Velos (18)
Q Exactive (13)
Illumina HiSeq 2500 (9)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 1500 (4)
Illumina HiSeq 2000 (4)
Q Exactive HF (4)
Bioanalyzer 2200 (2)
Chromium Controller (2)
NA (2)
NextSeq 550 (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
LTQ Orbitrap (2)
LTQ Velos (2)
Orbitrap Fusion Lumos (2)
Other (1)
Illumina Genome Analyzer II (1)
Nanodrop (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
MicrOTOF II (1)
Instrument (1)
Bruker impact Mass Spectrometer, high resolution QTOF MS (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
LTQ FT (1)
LTQ Orbitrap XL (1)
LTQ XL (1)
MS:1000031 (1)

Publication Date

2015 (88)
2014 (73)
2013 (73)
2012 (71)
2025 (68)
2024 (67)
2023 (58)
2010 (58)
2021 (57)
2022 (52)
2011 (45)
2026 (38)
2016 (34)
2008 (24)
2020 (21)
2018 (19)
2019 (19)
2009 (19)
2007 (11)
2005 (11)
2017 (8)
2006 (5)

UNIPROT ID/AC

P04049 (3)
P28482 (3)
P62993 (3)
Q02750 (3)
Q06124 (3)
Q07889 (3)
O14543 (2)
O15524 (2)
O60674 (2)
P01112 (2)
P01579 (2)
P05231 (2)
P08887 (2)
P15260 (2)
P17676 (2)
P23458 (2)
P40189 (2)
P40763 (2)
P42224 (2)
P62136 (2)
P67775 (2)
O15530 (1)
P07522 (1)
P12931 (1)
P20936 (1)
P31749 (1)
P35813 (1)
P52565 (1)
P60484 (1)
P61586 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:18132 (8)
CHEBI:25017 (8)
CHEBI:30769 (8)
CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:16449 (7)
CHEBI:16811 (7)
CHEBI:27266 (7)
CHEBI:7916 (7)
CHEBI:15741 (6)
CHEBI:15891 (6)
CHEBI:16708 (6)
CHEBI:16914 (6)
CHEBI:17234 (6)
CHEBI:26271 (6)
CHEBI:27897 (6)
CHEBI:28300 (6)
CHEBI:6650 (6)
CHEBI:16235 (5)
CHEBI:16335 (5)
CHEBI:16359 (5)
CHEBI:16704 (5)
CHEBI:16919 (5)
CHEBI:17126 (5)
CHEBI:17203 (5)
CHEBI:17268 (5)
CHEBI:15996 (1)
CHEBI:16152 (1)
CHEBI:16618 (1)
CHEBI:17552 (1)

Metabolite Name

Bilirubin (5)
Genistein (5)
Methionine (5)
Pantothenic acid (5)
12-Hydroxydodecanoic acid (4)
Adenine (4)
Alanine (4)
Choline (4)
Citric acid (4)
Creatine (4)
Cytosine (4)
Fumaric acid (4)
Glycine (4)
Hypoxanthine (4)
L-Tryptophan (4)
Leucine (4)
Linoleic acid (4)
Methionine (4)
Phosphocholine (4)
Proline (4)
Salicylic acid (4)
Succinic acid (4)
Tetrahydrocortisone (4)
Thymine (4)
Uracil (4)
Uric acid (4)
Valine (4)
1-Linoleoylglycerophosphocholine (3)
2-Hydroxycinnamic acid (3)
4-hydroxybenzoate (3)

First Public Date

2025 (8)
2019 (6)
2021 (3)
2020 (2)
2018 (2)
2016 (2)
2014 (2)
2026 (1)
2024 (1)
2023 (1)
2022 (1)

Modelling Approach

Constraint-based model (10)
Ordinary differential equation model (5)

Lab affiliation

West China Hospital, Sichuan University (7)
Daegu Catholic University School of Medicine (6)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
West China Hospital,Sichuan University (3)
Department of Biochemistry and Molecular Biology, Oklahoma Center for Respiratory and Infectious Diseases, Oklahoma State University, Stillwater, Oklahoma, USA (2)
Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea (2)
Department of Life Science (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Nanjing Medical University (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
PrognomiQ Inc. (2)
School of Life Science, Gwangju Institute of Science and Technology, Cheomdangwagiro123, Buk-gu, Gwangju, 61005, Republic of Korea (2)
Shenzhen People’s Hospital (2)
USDA-ARS (2)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
1 Precision Medicine Programme, Yong Loo Lin School of Medicine (YLLSoM), National University of Singapore, 2 NUS Centre for Cancer Research, National University of Singapore, 3 Department of Biochemistry, YLLSoM, National University of Singapore (1)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China (1)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
Advanced Mass Spectrometry Center, Research Core Facility, Frontiers Scienc Center for Disease-Related Molecular Network, West China Hospital (1)
Apoptosis and Molecular Disease Lab, Department of Biological Sciences, Seoul National University (1)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
BMBB, University of Minnesota, USA (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Cancer Science Institute, National University of Singapore, Singapore (1)
Carnegie Institution for Science (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (9)

Submitter Keywords

FROG (1)

Classification

bacteria (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (314)
RNA-seq of coding RNA (52)
ChIP-seq (21)
Methylation profiling by array (17)
Methylation profiling by high throughput sequencing (12)
RNA-seq of non coding RNA (11)
Other (10)
Comparative genomic hybridization by array (9)
Unknown experiment type (6)
ChIP-chip by tiling array (5)
Transcription profiling by SAGE (4)
ChIP-chip by array (4)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
Proteomic profiling by array (3)
Transcription profiling by RT-PCR (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Differential (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
MicroRNA profiling by high throughput sequencing (1)
Ribo-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (861)
2025 (832)
2023 (803)
2024 (774)
2021 (736)
2020 (529)
2019 (403)
2018 (356)
2016 (344)
2015 (340)
2017 (312)
2014 (307)
2013 (198)
2026 (143)
2012 (142)
2011 (129)
2010 (121)
2008 (59)
2009 (58)
2007 (27)
2006 (26)
2005 (16)
2004 (5)
2002 (2)
2001 (2)
2003 (1)
2000 (1)
1998 (1)

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PRDM15 is a master regulator of metabolism essential to sustain B-cell lymphomagenesis

PRDM family members are sequence-specific transcriptional regulators involved in cell identity and fate determination and are often dysregulated in cancer. The PRDM15 gene is of particular interest, given its relatively low expression in adult tissues and its overexpression in follicular lymphomas (...

2025-06-16 | MTBLS1639 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

Amidst the mismatch between domestic feed supply and demand in China, along with the competition for food between humans and animals, optimizing feed efficiency has become crucial for industry growth. Nevertheless, the biological processes driving variations in feed efficiency remain unexplored. ...

2026-03-10 | MTBLS14017 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14013 | MetaboLights

Role of jeotgal, a Korean traditional fermented fish sauce, in microbial dynamics and metabolite profiles during kimchi fermentation

We investigated the effects of jeotgal (fermented fish sauce) on kimchi fermentation, with or without saeu-jeot and myeolchi-jeot. Bacterial community analysis showed that Leuconostoc, Weissella, Lactobacillus, and Tetragenococcus were the dominant genera; however, their succession depended on the p...

2019-02-07 | MTBLS654 | MetaboLights

Multi-pronged approach to human mesenchymal stromal cells senescence quantification with a focus on label-free methods.

Not available

S-EPMC7807049 | biostudies-literature

Zelinkaderes yong sp. nov. from Korea - the first recording of Zelinkaderes (Kinorhyncha: Cyclorhagida) in Asia.

Not available

S-EPMC6661445 | biostudies-literature

Streptococcus oralis strain:HP01 | isolate:Yong-Hak Kim

Streptococcus oralis strain:HP01 | isolate:Yong-Hak Kim Genome sequencing

PRJNA841414 | ENA

Imaging adipose tissue browning using the TSPO-18kDa tracer [¹⁸F]FEPPA.

Not available