Young J J - OmicsDI

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Unknown (33873)
Transcriptomics (645)
Proteomics (532)
Genomics (307)
Metabolomics (186)
Genomic (15)
Multiomics (7)
Models (6)
Other (5)
Methylation profiling (1)

Organisms

Homo sapiens (425)
Mus musculus (258)
Rattus norvegicus (36)
Caenorhabditis elegans (15)
Arabidopsis thaliana (14)
Saccharomyces cerevisiae (10)
Sus scrofa (9)
Colinus virginianus (8)
Apis mellifera (8)
Danio rerio (8)
Zea mays (8)
Gallus gallus (7)
Bos taurus (6)
Daphnia magna (5)
Oryza sativa (5)
Drosophila melanogaster (4)
Medicago truncatula (3)
Salmo salar (3)
Buchnera aphidicola (2)
Brassica napus (2)
Coturnix japonica (2)
Oryza sativa Indica Group (2)
Sparus aurata (2)
Picea glauca (2)
Oryctolagus cuniculus (2)
Solanum lycopersicum (2)
Glycine max (2)
Oryza sativa Japonica Group (2)
Anas platyrhynchos (2)
Triticum aestivum (2)

Organisms

Mus musculus (48)
Homo sapiens (14)
Caenorhabditis elegans (2)
Saccharomyces cerevisiae (2)
Opisthorchis viverrini (1)
human respiratory syncytial virus (1)
Escherichia coli (1)
medicine metagenome (1)
human nasopharyngeal metagenome (1)
feces metagenome (1)
mouse gut metagenome (1)
marine metagenome (1)

Repository

biostudies-arrayexpress (680)
pride (353)
EGA (163)
MetaboLights (123)
MassIVE (117)
ENA (85)
GNPS (63)
iProX (31)
geo (29)
dbGaP (15)
PanoramaPublic (14)
jPOST (13)
PAXDB (6)
BioModels (5)
FAIRDOMHub (1)

Tissue

Cell culture (43)
Brain (36)
Epithelial cell (21)
Blood plasma (17)
Leaf (17)
Heart (16)
Plant cell (15)
Liver (15)
Lung (12)
Kidney (11)
Whole body (11)
Permanent cell line cell (8)
Skeletal muscle (7)
Blood serum (7)
Spleen (7)
Fibroblast (6)
Stem cell (6)
Testis (6)
Melanocyte (5)
Blood (5)
Cerebrospinal fluid (5)
Blood platelet (4)
Oocyte (3)
Skin (3)
Flower bud (3)
T cell (3)
Macrophage (3)
Posterior adductor muscle (2)
Somatic cell (2)
Layer of hippocampus (2)

Disease

Disease free (14)
Normal (6)
Breast cancer (6)
Melanoma (5)
Prostate adenocarcinoma (3)
Cardiovascular system disease (3)
Acute leukemia (3)
Osteoarthritis (2)
Parkinson's disease (2)
Parasitic helminthiasis infectious disease (2)
Skin melanoma (2)
Pancreatic ductal adenocarcinoma (2)
Alzheimer's disease (2)
Human immunodeficiency virus infectious disease (2)
Normal transgenic (transgenic betaARKct) (1)
Hypotension (1)
Not applicable (1)
Osteosarcoma (1)
IBDV infected (1)
Malignant Neoplasm (1)
Adenocarcinoma (1)
Bovine tuberculosis (1)
Diarrhea (1)
Haemonchiasis (1)
Sensorineural hearing loss (1)
Nuclear senile cataract (1)
Intestinal disease (1)
Maturity-onset diabetes of the young type 1 (1)
Arteriosclerotic cardiovascular disease (1)
Post-traumatic stress disorder (1)

Technology Type

Mass Spectrometry (353)
Shotgun proteomics (174)
Mass spectrometry (99)
Bottom-up proteomics (86)
Affinity purification coupled with mass spectrometry proteomics (43)
Data-dependent acquisition (33)
Data-independent acquisition (24)
NMR spectroscopy (22)
SWATH MS (20)
Gel-based experiment (19)
Top-down proteomics (10)
Illumina HiSeq 2000 (9)
Illumina 15K (8)
HDMSE (7)
Mass spectrometry assay (6)
SRM/MRM (6)
MSE (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
All-ion fragmentation (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina MiSeq (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (18)
Illumina HiSeq 2500 (11)
NextSeq 500 (9)
Illumina HiSeq 4000 (7)
Axon GenePix 4000B scanning hardware (6)
Illumina HiSeq 2000 (6)
Vortex (5)
NextSeq 2000 (3)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
C1000 Touch PCR thermal cycler (Bio-Rad) (1)
10X Genomics Chromium Single Cell Kit (1)
10x Chromium Controller (1)
Ilumina HiScan H166 (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
Agilent DNA Microarray Scanner G2565CA (1)
Illumina iScan (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina Genome Analyzer (1)
BAS-1800 [FUJIFILM] (1)
428 [Affymetrix] (1)
G2565AA DNA microarray scanner [Agilent] (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
NEBNext Ultra RNA Library Prep Kit for Illumina (New England BioLabs, Frankfurt am Main, Germany) (1)
HiSeq X Ten (1)

Publication Date

2016 (110)
2023 (89)
2022 (85)
2025 (84)
2014 (82)
2010 (82)
2019 (81)
2011 (77)
2012 (70)
2015 (68)
2021 (67)
2013 (66)
2024 (62)
2026 (62)
2020 (57)
2017 (55)
2018 (54)
2008 (54)
2009 (52)
2007 (24)
2006 (12)
2005 (8)
2004 (7)

UNIPROT ID/AC

A0A5F7Z9W6_MACMU (2)
F7FWW2_MACMU (2)
F6S686_MACMU (2)
A0A1D5R1Q1_MACMU (2)
A0A5F7ZN65_MACMU (2)
A0A1D5QHX6_MACMU (2)
P48436 (1)
Q15797 (1)
Q14457 (1)
P37023 (1)
Q9UNA0 (1)
P16112 (1)
O15105 (1)
P01583 (1)
P45452 (1)
P02458 (1)
Q13950 (1)
P00441 (1)
Q15109 (1)
P08253 (1)
Q04206 (1)
P25963 (1)
Q15796 (1)
Q13485 (1)
P01137 (1)
Q07812 (1)
P10415 (1)
P36897 (1)
Q16539 (1)
P42574 (1)

CHEBI ID

CHEBI:16919 (43)
CHEBI:15741 (42)
CHEBI:18237 (40)
CHEBI:28300 (38)
CHEBI:18012 (33)
CHEBI:6650 (33)
CHEBI:30915 (32)
CHEBI:17287 (15)
CHEBI:422 (13)
CHEBI:15846 (13)
CHEBI:17138 (11)
CHEBI:4170 (11)
CHEBI:18009 (10)
CHEBI:25608 (1)
CHEBI:40595 (1)
CHEBI:13389 (1)
CHEBI:50211 (1)
CHEBI:58273 (1)
CHEBI:16947 (1)
CHEBI:26689 (1)
CHEBI:25523 (1)
CHEBI:15351 (1)
CHEBI:30744 (1)
CHEBI:15346 (1)
CHEBI:16474 (1)
CHEBI:28087 (1)
CHEBI:15946 (1)
CHEBI:15361 (1)
CHEBI:18021 (1)
CHEBI:16908 (1)

Metabolite Name

Alanine (20)
Leucine (19)
Glycine (18)
Creatine (18)
Glutamine (18)
Valine (18)
Isoleucine (18)
Uracil (17)
Phenylalanine (17)
Hypoxanthine (16)
Alanine (16)
Ornithine (16)
Tyrosine (16)
Tyrosine (16)
Creatinine (15)
Glucose (15)
Proline (15)
Glutamate (15)
Threonine (15)
Glycine (15)
Creatine (14)
Xanthine (14)
Adenine (14)
Lactate (14)
Valine (14)
Histidine (14)
Arginine (14)
Lysine (14)
Threonine (14)
Serine (14)

First Public Date

2014 (17)
2025 (12)
2024 (10)
2023 (9)
2022 (8)
2020 (6)
2021 (5)
2017 (5)
2026 (3)
2019 (3)
2013 (3)
2015 (2)
2018 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (2)
Differential equation model (1)
Other (1)
Constraint-based model (1)

Lab affiliation

Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Department of Pharmaceutical Sciences, University of Illinois College of Pharmacy,Chicago,IL,USA Richard and Loan Hill Department of Biomedical Engineering, University of Illinois College of Engineering,Chicago, IL,USA University of Illinois Cancer Center,Chicago, IL,USA (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (3)
School of Pharmacy, Sungkyunkwan University, South Korea (3)
Boehringer Ingelheim Pharma GmbH & Co. KG Drug Discovery Sciences (3)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (3)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (2)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (2)
University of South Australia (2)
DZNE, Bonn, Germany (2)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (2)
Max Delbrück Center for Molecular Medicine (2)
Washington University in St. Louis (2)
Yonsei Proteome Research Center (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (2)
Functional Proteomics, ICR (2)
University of Edinburgh (2)
Laboratory of Vaccines for the Developing World, Institute for Glycomics, Southport, QLD, Australia (1)
Wayne State University Chemistry Department, Ahn Lab, United States of America (1)
Department of Biochemistry and Molecular Biology and Agricultural Chemistry and Soil science University of Alicante SPAIN (1)
Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University of London, London, UK (1)
Eye Center of the 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China (1)
Washington University in St. Louis - School of Medicine Division of Endocrinology, Metabolism & Lipid Research (1)
Department of Medicine, University of California San Diego, La Jolla, California 92093 (1)
Pfizer, INC. (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Classification

helminths (1)
viruses (1)
bacteria (1)

Modification

N6 (2)
31.989829 (1)
79.966331 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
N6-dimethyl-L-lysine (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (408)
RNA-seq of coding RNA (78)
ChIP-seq (47)
Methylation profiling by array (18)
ChIP-chip by array (15)
RNA-seq of non coding RNA (15)
Unknown experiment type (14)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA from single cells (14)
Methylation profiling by high throughput sequencing (10)
ChIP-chip by tiling array (6)
Transcription profiling by tiling array (6)
Genotyping by array (6)
Animal - High-throughput sequencing (3)
Other (3)
Baseline (2)
Bisulfite-seq (2)
ScATAC-seq (2)
MicroRNA profiling by array (2)
Genotyping by high throughput sequencing (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
CLIP-seq (1)
ATAC-seq (1)
RIP-seq (1)

Release Date

2025 (4477)
2022 (4250)
2023 (4197)
2024 (3896)
2021 (3560)
2020 (2728)
2019 (2153)
2018 (1847)
2017 (1425)
2016 (1179)
2015 (912)
2014 (809)
2026 (621)
2013 (555)
2012 (457)
2011 (428)
2010 (317)
2009 (242)
2008 (174)
2007 (95)
2006 (69)
2004 (39)
2005 (37)
2002 (23)
2003 (19)
1999 (13)
2000 (11)
2001 (10)
1998 (5)
1997 (2)

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Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients

BACKGROUND: The gut-brain axis and the intestinal microbiota are emerging as key players in health and disease. Shifts in intestinal microbiota composition affect a variety of systems, however, evidence of their direct impact on cognitive functions is still lacking. We tested whe...

2021-12-17 | MTBLS1437 | MetaboLights

Effect of short-term use of FFP2 (N95) masks on the salivary metabolome of young healthy volunteers: a pilot study.

The use of face masks has become an integral part of public life in the post-pandemic era. However, the understanding of the effect of wearing masks on physiology remains incomplete and is required for informing public health policies. For the first time, we report the effects of wearing FFP2 masks ...

2024-08-07 | MTBLS5803 | MetaboLights

Mus musculus strain:C57BL6/J

Mus musculus strain:C57BL6/J Transcriptome Sequencing Data

PRJNA957591 | ENA

Mus musculus strain:C57BL6/J

RNA sequencing analysis of MII oocytes, cumulus cells and blastocysts from young and middle-aged mice.

PRJDB16498 | ENA

Mus musculus strain:C57BL6/J

Comprehensive target DNA methylome analyses in young and aged mouse sperm

PRJDB7890 | ENA

Function, evolution, and structure of J-domain proteins.

Not available