Yu Niu N - OmicsDI

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Unknown (334)
Proteomics (24)
Transcriptomics (8)
Metabolomics (1)
Genomics (1)

Organisms

Schizophyllum commune H4-8 (14)
Mycobacterium tuberculosis SP7 (14)
Oryza sativa Japonica Group (14)
Candidatus Endoriftia persephonae (14)
Mycobacterium tuberculosis SP10 (14)
Mycobacterium tuberculosis SP13 (14)
Mycobacterium tuberculosis SP22 (14)
Chlamydomonas reinhardtii (14)
Pyricularia oryzae P131 (14)
Enterococcus mundtii CRL35 (14)
Oncorhynchus tshawytscha (14)
Pseudomonas canadensis (14)
Strongylocentrotus purpuratus (14)
Influenza A virus (A/California/04/2009(H1N1)) (14)
Homo (14)
Pseudomonas aeruginosa PAO1H2O (14)
Human alphaherpesvirus 1 strain 17 (14)
Quercus petraea (14)
Canis lupus (14)
Mycobacterium tuberculosis SP1 (14)
Marchantia polymorpha subsp. ruderalis (14)
Homo sapiens (5)
Mus musculus (4)
Zea mays subsp. mays (2)
Oryza sativa Japonica Group (2)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Bos taurus (1)
Staphylococcus aureus (1)
Escherichia coli (1)

Organisms

Mus musculus (1)

Repository

pride (14)
iProX (9)
biostudies-arrayexpress (8)
jPOST (1)
MetaboLights (1)
ENA (1)

Tissue

Brain (5)
Plant cell (2)
Venom (1)
Flower (1)
Testis (1)
Leaf (1)
Lung (1)
Cell culture (1)

Disease

Alzheimer's disease (3)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (12)
Mass spectrometry (1)
Bottom-up proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (7)
2024 (5)
2022 (5)
2025 (4)
2021 (2)
2019 (2)
2023 (2)
2016 (1)
2013 (1)
2010 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:27974 (1)
CHEBI:183372 (1)
CHEBI:192601 (1)
CHEBI:228797 (1)
CHEBI:75323 (1)
CHEBI:165341 (1)
CHEBI:190537 (1)
CHEBI:26756 (1)
CHEBI:32818 (1)
CHEBI:192665 (1)
CHEBI:72381 (1)
CHEBI:59750 (1)
CHEBI:183334 (1)
CHEBI:228796 (1)
CHEBI:75815 (1)
CHEBI:228795 (1)
CHEBI:189466 (1)
CHEBI:4903 (1)
CHEBI:228794 (1)
CHEBI:190595 (1)
CHEBI:167228 (1)
CHEBI:89315 (1)
CHEBI:64023 (1)
CHEBI:143163 (1)
CHEBI:176838 (1)
CHEBI:166535 (1)
CHEBI:194705 (1)
CHEBI:95050 (1)
CHEBI:228793 (1)
CHEBI:194253 (1)

Metabolite Name

3'-Adenosine monophosphate (3'-AMP) (1)
J147 (1)
1-methyl-N-(3-methyl-5-cinnolinyl)-1H-imidazole-4-sulfonamide (1)
6-anilino-1,3-dimethyl-1,2,3,4-tetrahydropyrimidine-2,4-dione (1)
Ip7G (1)
L-Threonic acid Calcium Salt (1)
Myricetin 3-O-beta-D-galactopyranoside (1)
Sodium Dehydrocholate (1)
4-(beta-D-Glucopyranosyloxy)-2-methylenebutanoic acid (1)
Dl-2-Amino-3-phosphonopropionic acid (1)
17 alpha-Ethynylestradiol (1)
PE O-18:1_20:4 (1)
Indoxylsulfuric acid (1)
Hydroxytriazolam (1)
LPE 19:1 (1)
Kinetin 9-riboside (1)
4-Hydroxy-L-Glutamic Acid (1)
PE 16:0_16:1 (1)
N1-(6-methyl-4-oxo-3,4-dihydroquinazolin-2-yl)-4-nitrobenzamide (1)
Alanyltyrosine (1)
(±)9-HpODE (1)
PE 16:0_17:1 (1)
7-hydroxy-3-phenyl-4H-chromen-4-one (1)
Sulfamethoxazole hydroxylamine (1)
5-Methoxyindole-3-Carbaldehyde (1)
2-[6-(1H-benzo[d]imidazol-2-yl)-2-pyridyl]-1H-benzo[d]imidazole (1)
Oxoadipic Acid (1)
N-acetyl-D-glucosamine (1)
1-Caffeoylquinic Acid (1)
Beta-Estradiol 17-Acetate (1)

First Public Date

2018 (1)

Study type

RNA-seq of coding RNA (7)
Comparative genomic hybridization by array (1)

Release Date

2023 (45)
2025 (43)
2024 (43)
2022 (41)
2021 (36)
2020 (36)
2015 (17)
2019 (17)
2018 (16)
2016 (12)
2017 (12)
2026 (9)
2013 (5)
2014 (4)
2010 (3)
2011 (3)

Lab affiliation

St. Jude Children's Research Hospital (2)
Departments of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (1)
College of Biology, Hunan University (1)
Team: Mass spectrometry of biological molecules Institute CBMN for Chemistry and Biology of Membranes and Nano-objects UMR 5248 CNRS-Bordeaux University 33607 Pessac - FRANCE (1)
Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University (1)
Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (1)
Lanzhou University, Lanzhou, Gansu, China (1)
Southern University of Science and Technology (1)
St. Jude Children’s Research Hospital (1)
St Jude Children's Research Hospital (1)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)

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Individual vs. combinatorial effect of elevated CO2 and Mg level on Arabidopsis thaliana liquid cultures by systems analysis of transcriptional proﬁling

This study contributes large-scale genes expression data of molecular function for a plant system under combined of two CO2 concentration and three Mg levels. It provides an additional example of the power of integrated analyses for the comprehensive study of the molecular physiology of complex biol...

ORGANISM(S): Arabidopsis thaliana

2015-05-01 | E-GEOD-64501 | biostudies-arrayexpress

Angiotensin Converting Enzyme-Inhibitors and Incidence of Non-infectious Uveitis in a Large Healthcare Claims Database.

Not available

S-EPMC8380755 | biostudies-literature

Urine metabolomics phenotyping and urinary biomarker exploratory in mild cognitive impairment and Alzheimer's disease.

INTRODUCTION Alzheimer's disease is a prevalent disease with a heavy global burden and is suggested to be a metabolic disease in the brain in recent years. The metabolome is considered to be the most promising phenotype which reflects changes in genetic, transcript, and protein ...

2024-01-11 | MTBLS8662 | MetaboLights

Risk of Non-infectious Uveitis with Metformin Therapy in a Large Healthcare Claims Database.

Not available

S-EPMC8423860 | biostudies-literature

Decreased risk of non-infectious anterior uveitis with statin therapy in a large healthcare claims database.

Not available

S-EPMC8384676 | biostudies-literature

Changes in C:N:P stoichiometry modify N and P conservation strategies of a desert steppe species Glycyrrhiza uralensis.

Not available

S-EPMC6107674 | biostudies-literature

Array CGH between GK and Wistar Rats for Detecting Copy Number Variations

The Goto-Kakizak (GK) rat, a nonobese animal model of Type 2 diabetes (T2D), were developed by repeated inbreeding of glucose-intolerent individuals selected from Wistar rats. During their development, GK rats suffer from reduced beta-cell mass and insulin resistance spontaneously (T2D phenotype), w...

ORGANISM(S): Rattus norvegicus

2010-12-31 | E-GEOD-21387 | biostudies-arrayexpress

Accumulation of Nicotinamide N-Methyltransferase (NNMT) in Cancer-associated Fibroblasts: A Potential Prognostic and Predictive Biomarker for Gastric Carcinoma.

Not available

S-EPMC7905490 | biostudies-literature

Proteome changes of lungs artificially infected with H-PRRSV and N-PRRSV by two-dimensional fluorescence difference gel electrophoresis.

Not available

S-EPMC2887434 | biostudies-literature

proteome analysis using mass spectrometry (MS) in acute shYthdf2-mediated knockdown of cultured RGCs

To identify mouse retinal proteomics changes after Ythdf2 knockdown, we extracted the proteomics of E15.5 retina neurons which were cultured and infected with lentiviral shYthdf2 or shCtrl by urea. After using 100 mM TEAB (Sigma) to dilute the urea concentration to less than 2 M in each sample, tryp...

ORGANISM(S): Mus musculus (Mouse)

2022-04-04 | PXD017775 | Pride

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368 Results

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INTRODUCTION Alzheimer's disease is a prevalent disease with a heavy global burden and is suggested to be a metabolic disease in the brain in recent years. The metabolome is considered to be the most promising phenotype which reflects changes in genetic, transcript, and protein ...

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