Zhang He H - OmicsDI

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Unknown (15099)
Proteomics (416)
Transcriptomics (145)
Genomics (84)
Metabolomics (59)
Models (16)
Multiomics (4)
Other (2)

Organisms

Homo sapiens (248)
Mus musculus (67)
Rattus norvegicus (16)
Arabidopsis thaliana (15)
Oryza sativa (6)
Escherichia coli (6)
Canis lupus familiaris (5)
Saccharomyces cerevisiae (5)
Zea mays (4)
Oryctolagus cuniculus (2)
Populus simonii (2)
Lateolabrax japonicus (2)
Bombyx mori (2)
Macaca mulatta (2)
Glycine max (2)
Drosophila melanogaster (2)
Medicago truncatula (2)
Tetranychus cinnabarinus (1)
(Populus tomentosa x Populus bolleana) x Populus tomentosa (1)
Rhodococcus opacus (1)
uncultured organism (1)
Bacteria (1)
Aspergillus oryzae (1)
Shigella flexneri (1)
seed metagenome (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor A3(2) (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

pride (216)
biostudies-arrayexpress (165)
iProX (125)
PeptideAtlas (66)
EGA (61)
MetaboLights (57)
BioModels (16)
MassIVE (9)
ENA (3)
GNPS (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (52)
Liver (44)
Brain (19)
Liver (16)
Blood plasma (10)
Lung (10)
Heart (9)
Epithelial cell (8)
Kidney (8)
Leaf (7)
Permanent cell line cell (7)
Others (6)
Hepatocyte (6)
Macrophage (6)
Spleen (6)
Testis (6)
B cell (5)
Plant cell (5)
Whole body (5)
Blood serum (4)
Primary cell (4)
Stem cell (4)
Cell suspension culture (3)
Colon (3)
Fibroblast (3)
HeLa cell (3)
Lymph node (3)
Placenta (3)
Plasma Non-glyco (2)
Adrenal adenoma cell (2)

Disease

Breast cancer (7)
Disease free (7)
Colon cancer (6)
Acute leukemia (2)
Cardiovascular system disease (2)
Hepatocellular carcinoma (2)
Severe acute respiratory syndrome (2)
Type 2 diabetes mellitus (2)
Bacterial infectious disease (1)
Diabetes mellitus (1)
Heart disease (1)
Not Available (1)
Abnormality of prenatal development or birth (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
Brain ischemia (1)
Burkitt lymphoma (1)
Cerebrovascular disease (1)
Cervix carcinoma (1)
Infantile hypotonia with psychomotor retardation and characteristic facies-3 (1)
Kidney disease (1)
Lymphoma (1)
Major depressive disorder (1)
Malaria (1)
Multiple myeloma (1)
Neurofibromatosis 1 (1)
Non-small cell lung carcinoma (1)
Osteoarthritis (1)
Pancreatic cancer (1)
Pancreatic carcinoma (1)

Technology Type

Mass Spectrometry (216)
Shotgun proteomics (126)
Mass spectrometry (44)
Bottom-up proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (22)
Data-dependent acquisition (14)
Gel-based experiment (13)
Mass spectrometry assay (12)
Data-independent acquisition (8)
SWATH MS (6)
Top-down proteomics (6)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (3)
Illumina HiSeq 2000, ILLUMINA (2)
All-ion fragmentation (2)
Proteogenomics (2)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (29)
Liquid Chromatography MS - positive - reverse phase (26)
Liquid Chromatography MS - positive - hilic (9)
LTQ (7)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - negative (4)
Illumina HiSeq 2500 (3)
Q Exactive (3)
Liquid Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Instrument (1)
Bruker maXis ESI Quadrupole TOF (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
QTRAP 4000 (AB Sciex) (1)
SYNAPT G1 HDMS (Waters) (1)
Orbitrap velos HCD (Thermo Scientific) (1)
Orbitrap velos CID (Thermo Scientific) (1)
TSQ Quantum XLS (Thermo Scientific) (1)
QExactive negative (Thermo Scientific) (1)
QExactive positive (Thermo Scientific) (1)

Publication Date

2022 (61)
2025 (50)
2021 (45)
2024 (40)
2013 (37)
2023 (35)
2020 (34)
2019 (33)
2010 (27)
2017 (26)
2014 (26)
2026 (26)
2015 (23)
2018 (21)
2012 (21)
2005 (13)
2011 (13)
2016 (12)
2009 (6)
2008 (5)
2006 (3)
2004 (3)
2002 (1)
2001 (1)
2007 (1)

UNIPROT ID/AC

P31327 (41)
P04003 (1)
Q15485 (1)
O00187 (1)
P01024 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
P02741 (1)
Q08828 (1)
P63092 (1)
P54750 (1)
Q5T5Y4 (1)
O14727 (1)
P99999 (1)
P55211 (1)
Q07812 (1)
P10415 (1)
Q9NR28 (1)
P62988 (1)
P98170 (1)
P55212 (1)
P55957 (1)
P42574 (1)
Q14790 (1)
O15519 (1)
O14763 (1)
P50591 (1)
P09874 (1)
P17612 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (17)
CHEBI:15354 (16)
CHEBI:17596 (16)
CHEBI:16040 (15)
CHEBI:16704 (15)
CHEBI:16393 (14)
CHEBI:17568 (14)
CHEBI:55328 (14)
CHEBI:15971 (14)
CHEBI:17895 (14)
CHEBI:17295 (14)
CHEBI:18344 (14)
CHEBI:30769 (14)
CHEBI:16708 (13)
CHEBI:17821 (13)
CHEBI:17154 (13)
CHEBI:16335 (13)
CHEBI:18132 (12)
CHEBI:16750 (12)
CHEBI:16196 (12)
CHEBI:16235 (12)
CHEBI:506227 (1)
CHEBI:17489 (1)
CHEBI:29108 (1)
CHEBI:14314 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:16905 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)

Metabolite Name

Uridine (12)
Inosine (11)
Hypoxanthine (11)
Adenine (10)
Uracil (9)
L-Arginine (9)
Choline (9)
Stearic acid (9)
Uric acid (9)
Xanthine (9)
Kynurenic acid (8)
Taurine (8)
Citric acid (8)
Adenosine (8)
Guanine (8)
Azelaic acid (8)
Myristic acid (8)
L-Tyrosine (8)
Indole (7)
Xanthosine (7)
Cytosine (7)
Tetradecanedioic acid (7)
Linoleic acid (7)
Deoxyinosine (7)
Guanosine (7)
Thymidine (7)
Creatine (7)
D-Glucose (6)
Leucine (6)
Genistein (6)

IsPrivate

False (16)

First Public Date

2023 (2)
2017 (1)

Modelling Approach

Ordinary differential equation model (16)

Modification

Not available (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
N6 (1)

Study type

Transcription profiling by array (87)
RNA-seq of coding RNA (36)
Methylation profiling by high throughput sequencing (12)
RNA-seq of non coding RNA (9)
ChIP-seq (8)
Transcription profiling by tiling array (3)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (2478)
2022 (2130)
2023 (2021)
2024 (1960)
2021 (1601)
2020 (1159)
2019 (742)
2018 (614)
2017 (512)
2016 (421)
2026 (366)
2015 (338)
2014 (270)
2013 (204)
2012 (133)
2011 (101)
2010 (91)
2009 (53)
2008 (37)
2007 (8)
2006 (8)
2005 (6)
2002 (4)
2003 (3)
2004 (2)
2001 (2)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
He JunJun (5)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (4)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Chongqing Medical University (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Institute of Drug Discovery Technology, Ningbo University, Ningbo, Zhejiang, 315211 China (2)
Jinan University, Guangzhou (2)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (2)
Lanzhou University (2)
MOE Key Laboratory of Tumor Molecular Biology and Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, Jinan University, Guangzhou, China (2)
Peking Union Medical College (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Sequence database group (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Zhejiang University (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1) Department of Cancer Biology, Dana–Farber Cancer Institute, Boston, MA, USA. 2) Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)

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Gene expression profile of Lactobacillus casei Zhang in fermented milk during transit in simulated gastrointestinal tract

The survival of probiotics could be strongly enhanced by delivery vehicles, but the mechanism was unknown. In this study, whole genome microarray technology was used to detect the gene expression profiles of probiotic Lactobacillus casei Zhang in the absence and presence of fermented milk in simulat...

ORGANISM(S): Lactobacillus casei str. Zhang

2011-12-31 | E-GEOD-23685 | biostudies-arrayexpress

Effect of probiotic Lactobacillus casei Zhang on liver gene expression of hypercholesterolemic rats

The hypocholesterolemic effect of probiotics has been observed, but the molecular mechanism of probiotic-host interaction is still obscure. In this study, DNA microarray technology was used to explore the gene expression profile of liver of hypercholesterolemic rats caused by administration of probi...

ORGANISM(S): Rattus norvegicus

2011-12-31 | E-GEOD-23740 | biostudies-arrayexpress

Transcriptome analysis of probiotic Lactobacillus casei Zhang during fermentation in soymilk

Lactobacillus casei Zhang is a probiotic bacterium isolated from koumiss in Inner Mongolia of China. Gene expression dynamics of L. casei Zhang during growth in soymilk was investigated in attempt to reveal the mechanisms involved in growth stimulation for growing probiotics in. Comparison of differ...

ORGANISM(S): Lactobacillus casei str. Zhang

2011-12-31 | E-GEOD-23652 | biostudies-arrayexpress

Gene expression profile of probiotic Lactobacillus casei Zhang during the late stage of milk fermentation

Lactobacillus casei Zhang is a probiotic bacterium isolated from koumiss in Inner Mongolia of China that has been commercially used as a starter in the manufacture of dairy products. To study the gene expression profiles of L. casei Zhang during growth in milk, a whole-genome microarray was used. Co...

ORGANISM(S): Lactobacillus casei str. Zhang

2011-12-31 | E-GEOD-24597 | biostudies-arrayexpress

Direct H-He chemical association in superionic FeO2H2He at deep-Earth conditions

Not available

S-EPMC9344844 | biostudies-literature

Theoretical evidence of H-He demixing under Jupiter and Saturn conditions.

Not available

S-EPMC11447227 | biostudies-literature

Lactobacillus plantarum Zhang-LL Inhibits Colitis-Related Tumorigenesis by Regulating Arachidonic Acid Metabolism and CD22-Mediated B-Cell Receptor Regulation.

Not available

S-EPMC10648432 | biostudies-literature

One-step triplex reverse-transcription PCR detection of porcine epidemic diarrhea virus, porcine sapelovirus, and porcine sapovirus.

Not available

S-EPMC6900713 | biostudies-literature

DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Protocol for a parallel assignment prospective, randomised, comparative trial to evaluate the safety and efficacy of intense pulsed light (IPL) combined with 3% diquafosol (DQS) ophthalmic solution in dry eye syndrome.

Not available

S-EPMC10465902 | biostudies-literature

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15821 Results

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