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UnknownTranscriptomic analysis reveals impact of gE/gI/TK deletions on host response to PRV infection.
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S-EPMC10731697 | biostudies-literature
TranscriptomicsRNA-seq of two-week-old seedlings of wild type (Col-0), dph1 and dph2 mutants (in Col-0 background) growing on 0.5x MS media with 0.5% (w/v) sucrose under normal growth conditions (16 h light/8 h dark).
This is comparative transcriptomics by using the wild type, dph1 and dph2 mutants to see the change of dph1 and dph2 mutants at transcript levels compared with wild type. Seedlings of two-week-old plants grown in liquid MS media were harvested for total RNA isolation by RNeasy Plant Mini Kit (Qiagen...
ORGANISM(S): Arabidopsis thaliana 
2024-03-01 | E-MTAB-13779 | biostudies-arrayexpress
TranscriptomicsArabidopsis AGO1 and AGO10 bound sRNAs
The shoot apical meristem (SAM) comprises a group of undifferentiated cells that divide to maintain the plant meristem and also give rise to all shoot organs. SAM fate is specified by class III HOMEODOMAIN-LEUCINE ZIPPER (HD-ZIP III) transcription factors, which are targets of miR166/165. In Arabido...
ORGANISM(S): Arabidopsis thaliana 
2012-08-03 | E-GEOD-39885 | biostudies-arrayexpress
TranscriptomicsRNA-seq of four-week-old shoot tissues of wild type (Col-0) and dph1 mutants (in Col-0 background) growing in soil under normal growth conditions
This is comparative transcriptomics by using the wild type and dph1 mutants to see the change of dph1 mutants at transcript levels compared with wild type. Rosette tissues of four-week-old plants grown in soil were harvested for total RNA isolation by RNeasy Plant Mini Kit (Qiagen). Libraries were p...
ORGANISM(S): Arabidopsis thaliana 
2021-12-28 | E-MTAB-11206 | biostudies-arrayexpress
MetabolomicsCell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells

Multicellular organisms such as plants contain various cell types with specialized functions. Analyzing the characteristics of each cell type reveals specific cell functions and enhances our understanding of organization and function at the organismal level. Guard cells (GCs) are specialized epid...

2024-09-03 | MTBLS3997 | MetaboLights
ProteomicsQuantitative proteomics based on TMT revealed the response of PK15 cells infected PEDV wild strain
Porcine epidemic diarrhea (PED), caused by porcine epidemic diarrhea virus (PEDV), is an acute and contagious enteric disease with high mortality in sucking piglets, causing huge economic losses to swine industry. In this study, we used tandem mass tag (TMT) quantitative protein analysis to investig...
ORGANISM(S): Sus Scrofa 
2023-11-13 | PXD046881 |
MetabolomicsIntegrated Multi-omics Analysis Identifies Diagnostic Biomarkers for Acute Coronary Syndrome in Type 2 Diabetes Mellitus Patients

Biomarkers for the early identification of acute coronary syndrome (ACS) risk remain inadequately investigated, particularly in patients with type 2 diabetes mellitus (T2DM), for whom timely clinical intervention may substantially enhance prognostic outcomes. The gut microbiota and serum metaboli...

2026-03-19 | MTBLS14087 | MetaboLights
ProteomicsProteomics analysis of different stages during mouse hepatic ischemia-reperfusion injury
6-plex TMT-based quantitative proteomics was used to analysis the proteomic profile in different stages of mouse hepatic ischemia-reperfusion injury.
ORGANISM(S): Mus musculus (Mouse) 
2017-11-23 | PXD007827 | Pride
Mouse 6-plex tmt Liver 
ProteomicsProteomic Analysis of FSCN1-Interacting Proteins in LSCC cells
Fascin actin-bundling protein 1 (FSCN1) is an evolutionarily conserved actin-bundling protein that plays a critical role in cell migration, motility, adhesion and cellular interactions. Although multiple clinical studies have implicated the expression of FSCN1 in laryngeal squamous cell carcinoma (L...
ORGANISM(S): Homo sapiens (Human) 
2019-09-09 | PXD013072 | Pride
Lscc Ls-ms/ms Fscn1 Interactomics Immunoprecipitation 
ProteomicsPhospho-proteomic analysis of palmitate (PA)-treated L02 cells w/wo sorafenib treatment
Label-free based phospho-proteomic was used to analysis protein phosphorylation profile of L02 hepatocytes with or without 0.5 mM PA stimulate in condition of DMSO or 10 μM sorafenib for 18h
ORGANISM(S): Homo sapiens (Human) 
2022-08-30 | PXD018214 | Pride
Label-free L02 cell line 
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