Zhang Ye Y - OmicsDI

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Unknown (8312)
Proteomics (231)
Transcriptomics (46)
Genomics (24)
Metabolomics (20)
Other (1)

Organisms

Homo sapiens (97)
Mus musculus (43)
Drosophila melanogaster (5)
Bombyx mori (3)
Ovis aries (2)
Rattus norvegicus (2)
Vibrio parahaemolyticus RIMD 2210633 (2)
Bos grunniens (1)
Camponotus floridanus (1)
Harpegnathos saltator (1)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Streptococcus suis (1)
Populus trichocarpa (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)
Caenorhabditis elegans (1)
Camellia oleifera (1)
Candida albicans (1)
Cervus nippon (1)
Danio rerio (1)
Escherichia coli K-12 (1)
Macaca fascicularis fascicularis (1)
Medicago truncatula (1)
Mycolicibacterium smegmatis MC2 51 (1)
Oryctolagus cuniculus (1)
Platycladus orientalis (1)
Pseudomonas aeruginosa PA14 (1)
Saccharomyces cerevisiae S288C (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

pride (123)
iProX (105)
biostudies-arrayexpress (59)
MetaboLights (20)
EGA (11)
GPMDB (1)
jPOST (1)
MassIVE (1)
PAXDB (1)

Tissue

Cell culture (30)
Blood (8)
Epithelial cell (6)
Whole body (6)
Liver (5)
Blood plasma (4)
Heart (4)
Hepatocyte (4)
B cell (3)
Brain (3)
Cell suspension culture (3)
Lung (3)
Ovary (3)
Testis (3)
Blood cell (2)
Colon (2)
Embryo (2)
Fibroblast (2)
Leaf (2)
Permanent cell line cell (2)
Posterior silk gland (2)
Primary cell (2)
Anther (1)
Bladder (1)
Blood serum (1)
Cochlea (1)
Diploid cell (1)
Epididymal white adipose tissue (1)
HEK-293 cell (1)
T cell (1)

Disease

Breast cancer (4)
Acute leukemia (3)
Disease free (3)
Multiple myeloma (2)
Severe acute respiratory syndrome (2)
Not Available (1)
Avian influenza (1)
Bacterial infectious disease (1)
Cardiovascular system disease (1)
Cervical cancer (1)
Colon cancer (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Liver cancer (1)
Lung cancer (1)
Polycystic ovary syndrome (1)
Stomach carcinoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (123)
Shotgun proteomics (65)
Mass spectrometry (18)
Bottom-up proteomics (15)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (11)
Gel-based experiment (7)
Top-down proteomics (7)
Data-independent acquisition (5)
SWATH MS (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (8)
Gas Chromatography MS - (4)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina Genome Analyzer II (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Instrument (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Xevo G2 QTOF (Waters) (1)
Bruker (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2022 (42)
2025 (40)
2024 (35)
2023 (35)
2021 (29)
2026 (23)
2019 (20)
2020 (14)
2014 (12)
2010 (12)
2012 (9)
2018 (9)
2016 (7)
2015 (7)
2017 (6)
2013 (3)
2007 (3)
2011 (2)
2009 (1)
2008 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

CHEBI ID

CHEBI:17596 (7)
CHEBI:55328 (6)
CHEBI:16393 (5)
CHEBI:16704 (5)
CHEBI:15971 (5)
CHEBI:15843 (5)
CHEBI:15729 (5)
CHEBI:15428 (5)
CHEBI:16449 (5)
CHEBI:30915 (5)
CHEBI:16335 (5)
CHEBI:15354 (5)
CHEBI:17895 (5)
CHEBI:16828 (5)
CHEBI:17368 (5)
CHEBI:30769 (5)
CHEBI:16390 (4)
CHEBI:143235 (4)
CHEBI:18186 (4)
CHEBI:15956 (4)
CHEBI:16610 (4)
CHEBI:27823 (4)
CHEBI:18176 (4)
CHEBI:27266 (4)
CHEBI:17650 (4)
CHEBI:17859 (4)
CHEBI:28834 (4)
CHEBI:36274 (4)
CHEBI:16359 (4)
CHEBI:76308 (4)

Metabolite Name

Hypoxanthine (6)
L-Ornithine (5)
Choline (5)
Adenosine (5)
Betaine (4)
Arachidonic acid (4)
L-Tryptophan (4)
Uric acid (4)
Creatinine (4)
Creatine (4)
Inosine (4)
Leucine (3)
PC(16:0/16:0) (3)
Glycine (3)
Uracil (3)
Valine (3)
Sphingosine (3)
7-Methylguanine (3)
N4-Acetylcytidine (3)
Phosphocholine (3)
L-Histidine (3)
Cotinine (3)
Taurine (3)
Cholic acid (3)
Theophylline (3)
Docosahexaenoic acid (3)
Pantothenic acid (3)
L-Arginine (3)
Sebacic acid (3)
Spermidine (3)

Study type

RNA-seq of coding RNA (16)
ChIP-chip by tiling array (11)
Transcription profiling by array (9)
ChIP-seq (6)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (4)
Methylation profiling by array (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1355)
2022 (1231)
2023 (1094)
2024 (1046)
2021 (892)
2020 (613)
2019 (418)
2018 (355)
2017 (272)
2016 (252)
2015 (206)
2026 (177)
2014 (158)
2012 (85)
2013 (77)
2011 (48)
2010 (30)
2009 (16)
2008 (14)
2007 (13)
2006 (8)
2005 (4)
2004 (3)
2003 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Dalian Institute of Chemical Physics, CAS (3)
Zhejiang University (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Huazhong Agricultural University (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (2)
Jinan University (2)
Sencond Military Medical University (2)
Shenzhen Hospital of Southern Medical University (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
University of Science and Technology of China (2)
Wiita Lab, Department of Laboratory Medicine, University of California San Francisco, USA (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)
Advanced Mass Spectrometry Center, Research Core Facility, Frontiers Scienc Center for Disease-Related Molecular Network, West China Hospital (1)
Affiliated Hospital of Qinghai University, Qinghai , China (1)
Amgen Inc. (1)
Anhui Agricultural University,China (1)
Beijing Tongren Hospital, Capital Medical University (1)
Ben May department of cancer research, The university of Chicago (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Cell Biology Department, Harvard Medical School (1)
Center for Translational Research in Hematological Malignancies, Houston Methodist Neal Cancer Center, Houston Methodist Academic Institute (1)

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The complete chloroplast genome of the brown alga Saccharina sp. ye-B (Laminariaceae: Phaeophyceae) from Sakhalin, Russia.

Not available

S-EPMC7899685 | biostudies-literature

Cloning expression and immunogenicity analysis of inhibin gene in Ye Mule Aries sheep.

Not available

S-EPMC6765352 | biostudies-literature

Localized DNA tetrahedrons assisted catalytic hairpin assembly for the rapid and sensitive profiling of small extracellular vesicle-associated microRNAs.

Not available

S-EPMC9714172 | biostudies-literature

Brain iron loading impairs DNA methylation and alters GABAergic function in mice.

Not available

S-EPMC6338660 | biostudies-literature

Identification of phosphorylation sites of BAG3

HEK293 cells were cultured in two 10-cm dishes and transfected with BAG3-FLAG as well as Myc vector, CaMKIIβ(D-S)-Myc, and CaMKIIδ(D-S)-MYC, respectively. After the cells were transfected for 24 h, they were treated with the indicated regent. The cells were lysed with NP-40 alternative cell lysis bu...

ORGANISM(S): Homo sapiens (Human)

2024-08-20 | PXD054722 | Pride