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UnknownInterpretable feature extraction and dimensionality reduction in ESM2 for protein localization prediction.
Not available
S-EPMC10818170 | biostudies-literature
TranscriptomicsIdentify the dysregulated miRNA in human colorectal cancer tissues
Dysregulated miRNA in human colorectal cancer (CRC) were identified through comparison between 4 CRC tumors and their adjacent normal tissues by miRNA array. Histologically-confirmed CRC were included in this study. CRC tissues and paired adjacent normal tissues were obtained from the resected surgi...
ORGANISM(S): Homo sapiens 
2013-03-20 | E-GEOD-45349 | biostudies-arrayexpress
ProteomicsProteomics of intestine in simulated microgravity rats
After 14 days simulated microgravity，rats jejunal mucosa was taken for proteomic study. A total of 1826 proteins were detected, and 335 differentially expressed proteins were detected, of which 190 were up-regulated and 145 were down-regulated.
ORGANISM(S): Rattus Norvegicus 
2020-09-17 | PXD021522 |
ProteomicsA collection of transcriptomic and proteomic datasets from sesame in response to salt stress
The proteome profiles in the shoots of two sesame genotypes with contrasting salinity tolerance were investigated under saline condition using an iTRAQ-based quantitative proteomics approach.
ORGANISM(S): Sesamum Indicum 
2019-03-08 | PXD013013 |
ProteomicsComparative proteomic and metabolomic analysis of resistant and susceptible Kentucky Bluegrass cultivars in response to infection by powdery mildew
In this study, we first analyzed the disease incidence of different disease-resistant P. pratensis varieties, and then investigated changes in their in vivo redox states. Isobaric tags for relative and absolute (iTRAQ) proteomics and nontargeted metabolomics were utilized to elucidate the response m...
ORGANISM(S): Poa Pratensis 
PXD052577 |
ProteomicsSelective identification of epigenetic regulators at methylated genomic sites by SelectID
Identification and quantification of biotinylated proteins enriched by the Sp-system at Chromosome 9 Satellite regions using TMT-labeled quantitative mass spectrometry
ORGANISM(S): Homo Sapiens 
2025-03-05 | PXD061483 |
ProteomicsValidation of α-satellite-associated regulators using the dCas9-TurboID system in HeLa cells
To validate whether the dCas9-TurboID system is applicable for proximity labeling at specific genomic regions, label-free mass spectrometry was employed to validate the satellite relative proteins that were enriched in the group of stable Hela cell line expressing sgAS.
ORGANISM(S): Homo Sapiens 
2025-03-05 | PXD061518 |
ProteomicsSelective identification of epigenetic regulators at methylated genomic sites
We applied SelectID coupled with the ultra-sensitive micro-DIA approach to enrich the associated proteins of Chromosome 9 satellite region and methylated LINE-1 elements.
ORGANISM(S): Homo Sapiens 
2025-03-08 | PXD061627 |
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