Zhao Bo B - OmicsDI

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Unknown (245)
Proteomics (59)
Genomics (16)
Transcriptomics (12)
Metabolomics (10)
Multiomics (3)
Other (1)

Organisms

Homo sapiens (52)
Chlamydomonas reinhardtii (10)
Marchantia polymorpha subsp. ruderalis (10)
Methylocystis sp. (10)
Porites pukoensis (10)
Bothrops insularis (10)
Bothrops jararaca (10)
Bothrops jararacussu (10)
Bothrops cotiara (10)
Streptomyces coelicolor (10)
Burkholderia ubonensis MSMB22 (10)
Pseudomonas aeruginosa PA103 (10)
Mus musculus (7)
Oryza sativa Indica Group (2)
Oryza sativa (2)
Escherichia coli (2)
uncultured bacterium (1)
Pan troglodytes (1)
Nicotiana tabacum (1)
Heterocephalus glaber (1)
Paenibacillus polymyxa (1)
Canis lupus (1)
Camellia sinensis var. assamica (1)
Rasamsonia (1)
Thermomyces (1)
Aspergillus (1)
Macaca fascicularis fascicularis (1)
Sus scrofa domesticus (1)
environmental samples (1)
Glycine max (1)

Repository

iProX (33)
biostudies-arrayexpress (18)
PeptideAtlas (14)
EGA (10)
MetaboLights (10)
pride (10)
MassIVE (2)
GPMDB (1)

Tissue

Plasma Non-glyco (11)
Others (3)
Cell culture (2)
Pancreas (1)
Kidney cell (1)
Brain (1)
Blood plasma (1)
Embryo (1)
Whole body (1)
Liver (1)

Disease

Normal (1)
Not Available (1)

Technology Type

Mass Spectrometry (10)
Mass spectrometry (8)
Shotgun proteomics (4)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Data-independent acquisition (1)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

LTQ Orbitrap Velos (12)
Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (5)
Gas Chromatography MS - (3)
LTQ Orbitrap Elite (2)
Instrument (1)
Q Exactive HF (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Xevo G2 QTOF (Waters) (1)
Xevo QTof MS (Waters) (1)
QExactive (1)

Publication Date

2015 (12)
2014 (7)
2025 (7)
2022 (7)
2021 (6)
2011 (5)
2013 (4)
2012 (3)
2024 (3)
2020 (3)
2019 (3)
2026 (3)
2016 (2)
2023 (2)
2004 (1)
2017 (1)
2018 (1)

UNIPROT ID/AC

Q9C075 (14)
Q99456 (14)
Q92764 (14)
Q8N1N4 (14)
Q86Y46 (14)
Q7RTS7 (14)
Q6KB66 (14)
Q15323 (14)
Q14532 (14)
Q14525 (14)
Q3SY84 (14)
Q14CN4 (14)
Q04695 (14)
Q01546 (14)
O75694 (14)
O14556 (14)
P35222 (14)
Q7Z3Z0 (14)
Q7Z3Y7 (14)
Q5XKE5 (14)
Q14974 (14)
P84077 (14)
P62241 (14)
P61204 (14)
P52209 (14)
Q9P1U1 (14)
Q9NSB2 (14)
Q9H4B7 (14)
Q9H0C2 (14)
Q9BYX7 (14)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000147251 (7)
ENSG00000247315 (3)

CHEBI ID

CHEBI:7916 (3)
CHEBI:73218 (2)
CHEBI:27410 (2)
CHEBI:30805 (2)
CHEBI:35584 (2)
CHEBI:36259 (2)
CHEBI:16750 (2)
CHEBI:30832 (2)
CHEBI:28842 (2)
CHEBI:15741 (2)
CHEBI:17568 (2)
CHEBI:55328 (2)
CHEBI:17596 (2)
CHEBI:28716 (2)
CHEBI:15756 (2)
CHEBI:17351 (2)
CHEBI:194570 (1)
CHEBI:191920 (1)
CHEBI:194568 (1)
CHEBI:194564 (1)
CHEBI:194560 (1)
CHEBI:194571 (1)
CHEBI:194569 (1)
CHEBI:194567 (1)
CHEBI:194563 (1)
CHEBI:194561 (1)
CHEBI:189014 (1)
CHEBI:176044 (1)
CHEBI:183546 (1)
CHEBI:89130 (1)

Metabolite Name

Uracil (3)
Palmitic acid (3)
Dodecanoic acid (3)
Adenine (3)
Guanosine (3)
Inosine (3)
Roxithromycin (2)
Geniposide (2)
Amastatin (2)
Umbelliferone (2)
3-Dehydrosphinganine (2)
Ornithine (2)
Purine (2)
L-Threonine (2)
Pantothenic acid (2)
L-Histidine (2)
Xanthosine (2)
Stearic acid (2)
Riboflavin (2)
L-Serine (2)
Xanthine (2)
Sebacic Acid (2)
Dibutyl Phthalate (2)
Hypoxanthine (2)
2-(3-fluorophenyl)-4-(4-Methylpiperazin-1-yl)-1H-pyrrolo[3,2-c]pyridine (1)
PE(18:1(12Z)-O(9S,10R)/22:5(7Z,10Z,13Z,16Z,19Z)) (1)
PE(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/20:4(8Z,11Z,14Z,17Z)) (1)
Voxelotor (1)
DG(a-15:0/6 keto-PGF1alpha/0:0) (1)
PA(20:5(5Z,8Z,11Z,14Z,17Z)/PGF1alpha) (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (8)
ChIP-seq (6)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (29)
2021 (28)
2022 (25)
2023 (24)
2024 (22)
2020 (22)
2016 (17)
2015 (14)
2014 (12)
2013 (12)
2019 (11)
2011 (10)
2012 (9)
2018 (7)
2017 (7)
2026 (6)
2009 (2)
2008 (2)
2004 (1)
2010 (1)
2007 (1)
2005 (1)

Lab affiliation

CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (2)
Kunming Institute of Zoology, Chinese Academy of Sciences (1)
Department of Comparative Biosciences,University of Illinois Urbana-Champaign (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Science, Xujiaping No.1, Lanzhou, Gansu, 730046 (1)
BGI-Shenzhen (1)
Institute of Basic Medical Sciences, Xiyuan hospital China Academy of Chinese Medical Sciences (1)
Jiangxi Province Key Laboratory of Laboratory Medicine, Department of Clinical Laboratory, The Second Affiliated Hospital of Nanchang University, Nanchang, China. (1)
Ocean University of China (1)
Proteomics (1)

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Epstein-Barr Virus Exploits Intrinsic B-Lymphocyte Transcription Programs to Achieve Immortal Cell Growth

Epstein-Barr Virus Nuclear Antigen 2 (EBNA2) gene regulation through the cell RBPJ transcription factor (TF) is essential for conversion of resting B-lymphocytes (RBLs) into Lymphoblastoid Cell Lines (LCLs). ChIP-seq investigation of EBNA2 and RBPJ sites in LCL DNA found EBNA2 at 5151 and RBPJ at 10...

ORGANISM(S): Homo sapiens

2011-07-01 | E-GEOD-29498 | biostudies-arrayexpress

Effects of the Entomopathogenic Fungus Mucor hiemalis BO-1 on the Physical Functions and Transcriptional Signatures of Bradysia odoriphaga Larvae.

Not available

S-EPMC9964685 | biostudies-literature

Exploration of hanging coffin customs and the bo people in China through comparative genomics.

Not available

S-EPMC12634697 | biostudies-literature

Autoantibodies in Chinese patients with chronic hepatitis B: prevalence and clinical associations.

Not available

S-EPMC4284347 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Na(5)(NH(4))Mn(3)[B(9)P(6)O(33)(OH)(3)]·1.5H(2)O.

Not available

S-EPMC2959984 | biostudies-literature

Epstein Barr Virus Nuclear Antigen 3C binds to BATF/IRF4/SPI1 sites and represses CDKN2A by recruiting Sin3A

We report the application of ChIP Seq to study the Epstein Barr Virus Nuclear Antigen 3C, an essential transcriptional regulator involved in the transformation of Resting B Lymphocytes to the immortalized Lymphoblast Cell Lines Examination of viral and cellular transcription factors in 1 type of cel...

ORGANISM(S): Homo sapiens

2013-12-22 | E-GEOD-52632 | biostudies-arrayexpress

Redetermination of Ce[B(5)O(8)(OH)(H(2)O)]NO(3)·2H(2)O.

Not available

S-EPMC3344287 | biostudies-literature

Human pancreatic cancer LC-MSMS

This project aims to research protein-protein interaction of pancreatic cancer cells under different DNA replication pressure.

ORGANISM(S): Homo sapiens (Human)

2022-09-20 | PXD032951 | Pride

The NF-kB genomic landscape in lymphoblastoid B-cells

The nuclear factor kB (NF-kB) subunits RelA, RelB, c-Rel, p50 and p52 are each critical for B-cell development and function. To systematically characterize their responses to canonical and non-canonical NF-kB pathways activity, we performed ChIP-seq analysis in lymphoblastoid B-cells. We found a su...

ORGANISM(S): Homo sapiens

2014-08-29 | E-GEOD-55105 | biostudies-arrayexpress

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343 Results

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OmicsDI is part of the ELIXIR infrastructure

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