Zheng F F - OmicsDI

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Unknown (12648)
Proteomics (298)
Transcriptomics (103)
Metabolomics (66)
Genomics (42)
Multiomics (5)
Models (2)
Genomic (2)
Other (1)

Organisms

Homo sapiens (201)
Mus musculus (73)
Caenorhabditis elegans (44)
Arabidopsis thaliana (14)
Saccharomyces cerevisiae (8)
Triticum aestivum (7)
Zea mays (4)
Danio rerio (4)
Drosophila melanogaster (2)
Oryctolagus cuniculus (2)
Staphylococcus aureus (1)
Pseudoalteromonas sp. A2 (1)
Neurospora tetrasperma (1)
Cynoglossus semilaevis (1)
Cicer arietinum (1)
Oryza rufipogon (1)
Neurospora crassa OR74A (1)
Manihot esculenta (1)
Rosa hybrid cultivar (1)
Francisella tularensis subsp. holarctica LVS (1)
Zea mays subsp. mays (1)
Bacillus thuringiensis (1)
Pan troglodytes (1)
Brassica napus (1)
Equus caballus (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Oryza sativa Japonica Group (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Mus musculus (5)
Equisetum arvense subsp. arvense (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

pride (164)
biostudies-arrayexpress (116)
iProX (76)
MetaboLights (63)
PeptideAtlas (45)
EGA (21)
MassIVE (9)
ENA (8)
GNPS (3)
jPOST (3)
BioModels (2)
dbGaP (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (39)
Epithelial cell (17)
Liver (8)
Blood plasma (7)
Early embryonic cell (6)
Colon (5)
Kidney (5)
Whole body (5)
Leaf (4)
Testis (4)
Others (3)
Blood serum (3)
Brain (3)
Embryonic stem cell (3)
Hepatocyte (3)
Lung (3)
Permanent cell line cell (3)
Plant cell (3)
Root (3)
Bark (2)
Endothelial cell (2)
Macrophage (2)
Prostate cancer cell line (2)
Rosette (2)
Skin (2)
Acute myeloid leukemia cell (1)
Aortic valve (1)
B cell (1)
Blood cancer cell (1)
Blood cell (1)

Disease

Disease free (7)
Breast cancer (6)
Colon cancer (5)
Normal (3)
Prostate adenocarcinoma (3)
Acute kidney tubular necrosis (2)
Malignant neoplasm of ovary (2)
DNA repair deficiency (1)
"hyperglycaemic, obese and insulin resistant" (1)
Not Available (1)
Adult hepatocellular carcinoma (1)
Bone cancer (1)
Brain cancer (1)
Brain glioma (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic lymphocytic leukemia (1)
Colorectal adenoma (1)
Colorectal cancer (1)
Crohn's disease (1)
Inflammatory bowel disease (1)
Kidney cancer (1)
Lung cancer (1)
Lung carcinoma (1)
Mastitis (1)
Myocardial ischemia (1)
Parasitic helminthiasis infectious disease (1)
Parasitic infectious disease (1)
Thyroid cancer (1)
Ulcerative colitis (1)

Technology Type

Mass Spectrometry (164)
Shotgun proteomics (72)
Mass spectrometry (56)
Bottom-up proteomics (28)
Data-dependent acquisition (25)
Affinity purification coupled with mass spectrometry proteomics (19)
Data-independent acquisition (15)
Gel-based experiment (10)
Mass spectrometry assay (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
SRM/MRM (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
HDMSE (2)
MSE (2)
Proteogenomics (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (36)
Liquid Chromatography MS - negative - reverse phase (23)
Liquid Chromatography MS - positive - reverse phase (23)
Liquid Chromatography MS - negative - hilic (7)
Liquid Chromatography MS - alternating - hilic (6)
Illumina HiSeq 2000 (5)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - (4)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina NovaSeq X (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
TOF Pegasus HT (LECO) (2)
MA900, Sony (1)
10x Chromium Controller (1)
454 GS FLX (1)
Illumina Genome Analyzer IIx (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap XL (1)
Instrument (1)
LTQ (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Orbitrap Fusion Lumos ETD (Thermo Scientific instrument model) (1)

Publication Date

2015 (57)
2023 (53)
2025 (52)
2026 (46)
2022 (42)
2024 (40)
2021 (31)
2020 (23)
2014 (22)
2019 (20)
2013 (17)
2012 (15)
2017 (14)
2011 (14)
2010 (12)
2018 (6)
2016 (5)
2009 (5)
2008 (3)
2006 (2)
2007 (1)
2004 (1)

UNIPROT ID/AC

A9UJN7 (42)
B3CJ34 (42)
B3WFT8 (42)
C1P640 (42)
D0IMZ5 (42)
D0VWL6 (42)
G1K0V8 (42)
G3MU14 (42)
G4S034 (42)
G4SI07 (42)
G4SL51 (42)
G5EBJ7 (42)
G5EBP5 (42)
G5EBV6 (42)
G5EBY3 (42)
G5ECM6 (42)
G5ECR0 (42)
G5ECS9 (42)
G5ECU5 (42)
G5ED07 (42)
G5ED41 (42)
G5EDD3 (42)
G5EDQ4 (42)
G5EDS2 (42)
G5EDV3 (42)
G5EDY2 (42)
G5EE04 (42)
G5EEG8 (42)
G5EEK9 (42)
G5EEM5 (42)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16704 (24)
CHEBI:17368 (23)
CHEBI:30769 (23)
CHEBI:15891 (22)
CHEBI:16335 (22)
CHEBI:30915 (21)
CHEBI:15741 (20)
CHEBI:15756 (20)
CHEBI:16708 (20)
CHEBI:16737 (20)
CHEBI:16919 (20)
CHEBI:17596 (20)
CHEBI:32816 (20)
CHEBI:7916 (20)
CHEBI:16750 (19)
CHEBI:17154 (19)
CHEBI:17568 (18)
CHEBI:18012 (18)
CHEBI:16235 (17)
CHEBI:15354 (16)
CHEBI:15428 (16)
CHEBI:15611 (16)
CHEBI:16865 (16)
CHEBI:17750 (16)
CHEBI:17821 (16)
CHEBI:16856 (15)
CHEBI:17015 (15)
CHEBI:17351 (15)
CHEBI:17562 (15)
CHEBI:17748 (15)

Metabolite Name

Uridine (18)
Guanosine (17)
Hypoxanthine (17)
Inosine (16)
Taurine (16)
Adenosine (15)
Creatine (14)
Creatinine (13)
Glycerophosphocholine (13)
Riboflavin (13)
Xanthine (13)
Adenine (12)
Citrulline (12)
Guanine (12)
Spermidine (12)
Benzoic acid (11)
Choline (11)
Deoxycholic acid (11)
N-Acetyl-L-phenylalanine (11)
Azelaic acid (10)
Citrate (10)
Citric acid (10)
Cytidine (10)
Indole (10)
L-Arginine (10)
L-Phenylalanine (10)
Pantothenic acid (10)
Thymidine (10)
Cholic acid (9)
Deoxyguanosine (9)

First Public Date

2014 (3)
2024 (2)
2023 (1)
2017 (1)
2015 (1)

Modelling Approach

Computational model (2)

Lab affiliation

Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
BGI Research (3)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
Department of Urology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China (2)
Hong Kong University of Science and Technology (2)
Hu Nan (2)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (2)
West China Second University Hospital, Sichuan University (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Max-Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany 2 University of Marburg, Center for Synthetic Microbiology (SYNMIKRO) & Departments of Chemistry and Biology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1)Chongqing Medical University;2) Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital (1)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
1State Key Laboratory of Biotherapy, West China Second University Hospital, Sichuan University;China (1)
Affiliation* Key Laboratory of Genetics and Breeding, Zhejiang Institute of Freshwater Fisheries, Huzhou, China (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Beijing Institute of Hepatology, Beijing You’an Hospital, Capital Medical University, Beijing 100069, China (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 20 Biopolis Way, #06-01 Centros, Singapore 138668, Singapore (1)
Brigham and Women's Hospital and Harvard Medical School (1)
CAS Center for Excellence in Molecular Plant Sciences (1)

IsPrivate

False (2)

Submitter Keywords

Ersilia (2)
FAIR-AIML (2)
Machine Learning Model (2)

Classification

bacteria (1)

Modification

-17.026549 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (33)
ChIP-seq (9)
RNA-seq of non coding RNA (8)
Methylation profiling by high throughput sequencing (4)
Other (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Genotyping by array (1)
CLIP-seq (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2025 (1862)
2022 (1669)
2023 (1484)
2024 (1465)
2021 (1387)
2020 (1019)
2019 (736)
2018 (581)
2017 (491)
2016 (437)
2015 (400)
2026 (294)
2014 (283)
2013 (191)
2012 (130)
2011 (105)
2010 (72)
2009 (65)
2008 (39)
2005 (17)
2007 (11)
2004 (8)
2006 (7)
2003 (5)
2000 (2)
1998 (2)
1999 (1)

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Gene Expression of F. tularensis LVS in hepatocytic cell line FL83B vs LVS cultured in MH broth

Transcriptional profiling of LVS grown in hepatocytic cell line FL83B was compared to that of LVS cultued in MH broth to discover genes important for intracellular growth. Two-condition experiment, Intracellular vs. Broth. Biological replicates: 4 Broth, 4 intracellular, independently grown and har...

ORGANISM(S): Francisella tularensis subsp. holarctica LVS

2013-01-25 | E-GEOD-43731 | biostudies-arrayexpress

Identification of the cellular component interacted with F. nucleatum.

We incubated F. nucleatum lysates with biotinylated proteins from KRAS p.G12D, KRAS p.G13D and KRAS WT cells respectively. Subsequent western blot analysis showed that three candidate proteins from F. nucleatum might interact with KRAS p.G12D cells. The bands of interest were then submitted for mass...

ORGANISM(S): Fusobacterium nucleatum CTI-1

2024-01-25 | PXD048686 | Pride

Kras g12d fn1859

Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici.

Not available

S-EPMC2386484 | biostudies-literature

Transcription profiling by high throughput sequencing of 7 tissues of maize inbred line Zheng 58

RNA-sequencing of 5 tissues of maize inbred line Zheng 58: mature silk (MS), mature pollen (MP), mature ovary (MO), and 6-days old seedling (SL), immature silk (IMS)

ORGANISM(S): Zea mays

2013-01-26 | E-MTAB-964 | biostudies-arrayexpress

Transcription profiling of human gingival epithelial cell transcriptional responses to commensal and opportunistic oral microbial species.

Transcriptional profiling was utilized to define the biological pathways of gingival epithelial cells modulated by co-culture with the oral commensal S. gordonii and the opportunistic commensal F. nucleatum. We used microarrays to detail the global programme of gene expression underlying infection a...

ORGANISM(S): Homo sapiens

2009-04-28 | E-GEOD-6927 | biostudies-arrayexpress

Difluorocarbene-Derived Trifluoromethylthiolation and [(18)F]Trifluoromethylthiolation of Aliphatic Electrophiles.

Not available

S-EPMC4692268 | biostudies-literature

Identification of a Novel Alternaria alternata Strain Able to Hyperparasitize Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust.

Not available

S-EPMC5281574 | biostudies-literature

Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001-2015.

Not available

S-EPMC5719434 | biostudies-literature

The complete mitochondrial genomes of Puccinia striiformis f. sp. tritici and Puccinia recondita f. sp. tritici.