Zheng Li L - OmicsDI

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Unknown (12093)
Proteomics (347)
Transcriptomics (170)
Metabolomics (70)
Genomics (34)
Models (4)
Multiomics (3)

Organisms

Homo sapiens (184)
Mus musculus (83)
Arabidopsis thaliana (13)
Saccharomyces cerevisiae (6)
Danio rerio (5)
Drosophila melanogaster (5)
Macaca mulatta (4)
Caenorhabditis elegans (4)
cellular organisms (3)
Glycine max (3)
Urocitellus parryii (2)
Oryza sativa (2)
Staphylococcus aureus (1)
Sphingomonas sp. ATCC 31555 (1)
Spalax carmeli (1)
Pseudoalteromonas sp. A2 (1)
Nannospalax galili (1)
Cynoglossus semilaevis (1)
Oryza rufipogon (1)
Rhizoctonia solani AG-1 IA (1)
Ipomoea batatas (1)
Capra hircus (1)
Streptococcus suis 05ZYH33 (1)
Marmota monax (1)
Chlorocebus aethiops (1)
synthetic construct (1)
Apis mellifera (1)
Schizosaccharomyces pombe (1)
Nicotiana tabacum (1)
Solanum tuberosum (1)

Repository

biostudies-arrayexpress (193)
pride (172)
iProX (153)
MetaboLights (68)
MassIVE (12)
EGA (11)
BioModels (4)
jPOST (4)
PeptideAtlas (3)
GNPS (2)
PanoramaPublic (2)
PAXDB (1)

Tissue

Cell culture (39)
Epithelial cell (16)
Leaf (9)
Colon (8)
Liver (7)
Testis (7)
Early embryonic cell (6)
Hepatocyte (6)
Permanent cell line cell (6)
Lung (5)
Blood (4)
Brain (4)
Heart (4)
Kidney (4)
Whole body (4)
Others (3)
Blood plasma (3)
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Bone marrow (2)
Embryo (2)
Endothelial cell (2)
Fibroblast (2)
HeLa cell (2)
Skin (2)
Sperm (2)
Spleen (2)
B cell (1)
Blood cancer cell (1)
Blood serum (1)
Bone cancer cell line (1)

Disease

Colon cancer (6)
Disease free (6)
Malignant neoplasm of ovary (3)
Cervix carcinoma (2)
Chronic myelogenous leukemia (1)
Multiple myeloma (1)
Adult hepatocellular carcinoma (1)
Alzheimer's disease (1)
Breast cancer (1)
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Cognitive disorder (1)
Colorectal cancer (1)
Echinococcosis (1)
Gastric ulcer (1)
Kidney cancer (1)
Liver cancer (1)
Lung cancer (1)
Lung carcinoma (1)
Mastitis (1)
Non-alcoholic steatohepatitis (1)
Pancreatic ductal adenocarcinoma (1)
Plasmodium falciparum malaria (1)
Polycystic Kidney (1)
Prostate adenocarcinoma (1)
Schizophrenia (1)
Thyroid cancer (1)
Type 1 diabetes mellitus (1)
Type 2 diabetes mellitus (1)
Uveal melanoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (172)
Shotgun proteomics (62)
Mass spectrometry (58)
Bottom-up proteomics (24)
Gel-based experiment (21)
Data-dependent acquisition (20)
Affinity purification coupled with mass spectrometry proteomics (17)
Data-independent acquisition (14)
Mass spectrometry assay (8)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Top-down proteomics (6)
SRM/MRM (4)
SWATH MS (4)
NMR spectroscopy (2)
Affinity proteomics (2)
HDMSE (2)
Mass spectrometry imaging (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
Glycoproteomics (1)
MSE (1)
Olink affinity proteomics (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (28)
Liquid Chromatography MS - positive - reverse phase (26)
Q Exactive HF (7)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - alternating - reverse phase (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
10x Genomics Chromium Controller (3)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - hilic (3)
TripleTOF 6600 (2)
Q Exactive Plus (2)
TOF Pegasus HT (LECO) (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Bruker (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Illumina Genome Analyzer II (1)
NextSeq 500 (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
LTQ Orbitrap Velos (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)

Publication Date

2023 (74)
2024 (65)
2025 (58)
2022 (55)
2021 (54)
2026 (50)
2014 (41)
2013 (31)
2020 (30)
2012 (29)
2015 (25)
2019 (21)
2011 (20)
2010 (17)
2016 (14)
2017 (11)
2018 (8)
2007 (5)
2009 (3)
2006 (2)
2005 (1)

UNIPROT ID/AC

A0A059Q7A1_GOSHI (1)
A0A068EXJ9_GOSHI (1)
A0A068LCP3_GOSHI (1)
A0A075D3J1_GOSHI (1)
A0A075T4D3_GOSHI (1)
A0A075TB08_GOSHI (1)
A0A076FRP2_GOSHI (1)
A0A076JYC5_GOSHI (1)
A0A0A0QBB1_GOSHI (1)
A0A0A6ZHA3_GOSHI (1)
A0A0A7DNH6_GOSHI (1)
A0A0A7R535_GOSHI (1)
A0A0A7R545_GOSHI (1)
A0A0A7R547_GOSHI (1)
A0A0A7R5E2_GOSHI (1)
A0A0C5LA06_GOSHI (1)
A0A0G2QMZ0_GOSHI (1)
A0A0P0FHY8_GOSHI (1)
A0A0U1WT38_GOSHI (1)
A0A0U2KVS8_GOSHI (1)
A0A0U2L631_GOSHI (1)
A0A193CKI4_GOSHI (1)
A0A1B1HY16_GOSHI (1)
A0A1B1QEI7_GOSHI (1)
A0A1U8HGM8_GOSHI (1)
A0A1U8HGQ8_GOSHI (1)
A0A1U8HGS2_GOSHI (1)
A0A1U8HGT5_GOSHI (1)
A0A1U8HGZ7_GOSHI (1)
A0A1U8HGZ9_GOSHI (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (19)
CHEBI:15891 (17)
CHEBI:16704 (16)
CHEBI:15741 (16)
CHEBI:32816 (16)
CHEBI:30769 (16)
CHEBI:7916 (15)
CHEBI:30915 (15)
CHEBI:17596 (15)
CHEBI:16708 (14)
CHEBI:17568 (14)
CHEBI:30887 (13)
CHEBI:17750 (13)
CHEBI:17154 (13)
CHEBI:16335 (13)
CHEBI:16737 (13)
CHEBI:16919 (13)
CHEBI:30746 (12)
CHEBI:17859 (12)
CHEBI:55328 (12)
CHEBI:16411 (12)
CHEBI:17821 (12)
CHEBI:16856 (12)
CHEBI:16865 (12)
CHEBI:15611 (12)
CHEBI:17015 (12)
CHEBI:16750 (12)
CHEBI:16235 (12)
CHEBI:17895 (12)
CHEBI:22984 (1)

Metabolite Name

Hypoxanthine (17)
Taurine (13)
Guanosine (13)
Indole (12)
Spermidine (12)
Riboflavin (12)
Uridine (12)
Inosine (12)
Choline (11)
Deoxycholic acid (11)
Adenosine (11)
Guanine (11)
Xanthine (11)
Creatine (11)
Glycerophosphocholine (11)
Betaine (10)
Pantothenic acid (10)
Sarcosine (10)
Thymine (9)
Sphingosine (9)
Sphingosine 1-phosphate (9)
Benzoic acid (9)
L-Proline (9)
L-Arginine (9)
Glutathione (9)
Citric acid (9)
Oleamide (9)
Azelaic acid (9)
Creatinine (9)
L-Phenylalanine (9)

IsPrivate

False (4)

Submitter Keywords

Ersilia (2)
FAIR-AIML (2)
Machine Learning Model (2)

Modelling Approach

Computational model (2)
Ordinary differential equation model (2)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (69)
RNA-seq of coding RNA (64)
ChIP-seq (14)
RNA-seq of non coding RNA (11)
Methylation profiling by array (8)
Methylation profiling by high throughput sequencing (8)
Comparative genomic hybridization by array (5)
Other (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Transcription profiling by SAGE (1)
Baseline (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
DNA-seq (1)

Release Date

2025 (1906)
2022 (1744)
2023 (1504)
2024 (1485)
2021 (1331)
2020 (952)
2019 (666)
2018 (526)
2017 (424)
2016 (373)
2015 (368)
2026 (283)
2014 (244)
2013 (155)
2012 (117)
2011 (79)
2010 (50)
2009 (29)
2008 (17)
2006 (9)
2007 (8)
2005 (8)
2004 (5)
2003 (1)
1999 (1)
1998 (1)

Lab affiliation

The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (4)
Tsinghua University, China (4)
BGI Research (3)
China Agricultural University, College of Animal Science and Technolgoy, Animal genetics and breeding (2)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
Huazhong Agricultural University (2)
Penn State College of Medicine, Hershey, PA, USA (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Sichuan University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
West China Second University Hospital, Sichuan University (2)
Westlake University, Hangzhou,Zhejiang,CHINA (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Max-Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany 2 University of Marburg, Center for Synthetic Microbiology (SYNMIKRO) & Departments of Chemistry and Biology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 3Biological and Biomedical Sciences Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Army Medical University (Third Military Medical University) (1)
Army Military Medical University (1)
Army medical university (1)
Artemisinin Research Center, Institute of Chinese Materia Medica, China Academy ofChinese Medical Sciences (1)
Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation, China (1)
Bengbu Medical University (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7986 | MetaboLights

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

2024-09-26 | MTBLS7996 | MetaboLights

Quantum view of Li-ion high mobility at carbon-coated cathode interfaces.

Not available

S-EPMC9803833 | biostudies-literature

Multi-omics driven paradigm for construction of traditional Chinese Medicine Zheng (syndrome) diagnosis and treatment model, taking Shi Zheng (syndrome of dampness) as an example.

Not available

S-EPMC11890557 | biostudies-literature

Integrative genomic and proteomic studies of Leishmania donovani strains revealed genetic features associated with drug resistance

Leishmaniasis is a neglected tropical disease affecting millions of people worldwide. Emerging drug resistance of Leishmania species poses threaten to the effective control and elimination of this neglected tropical disease. Here we conducted whole genome resequencing, proteome profiling, and compar...

ORGANISM(S): Leishmania <subgenus>

2021-09-09 | PXD017089 | Pride