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TranscriptomicsThe galactose regulator GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger.
Galactose catabolism in Aspergillus nidulans is regulated by at least two regulators, GalR and GalX. In Aspergillus niger only GalX is present, and its role in D-galactose catabolism in this fungus was investigated. Phenotypic and gene expression analysis of a wild type and a galX disruptant reveale...
ORGANISM(S): Aspergillus niger 
2012-09-20 | E-GEOD-40219 | biostudies-arrayexpress
TranscriptomicsAspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism
The genome of the filamentous fungus Aspergillus niger is rich in genes encoding pectinases, a broad class of enzymes that have been extensively studied due to their use in industrial applications. The sequencing of the A. niger genome provided more knowledge concerning the individual pectinolytic ...
ORGANISM(S): Aspergillus niger 
2014-03-13 | E-GEOD-51023 | biostudies-arrayexpress
TranscriptomicsAttachment of Bacillus subtilis to the hyphae of Aspergillus niger results in altered metabolism and defense mechanisms in both partner
Interaction of microbes affects the growth, metabolism and differentiation of members of the community. While direct and indirect competitions, like spite and nutrient consumption have negative effect on each other, microbes also evolved in nature not only to fight, but in some cases to adapt or sup...
ORGANISM(S): Aspergillus niger 
2014-10-07 | E-GEOD-46187 | biostudies-arrayexpress
TranscriptomicsUncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle
The common edible mushroom Agaricus bisporus is a basidiomycete that thrives on decaying plant material in the forests and grasslands of North America and Europe. It is adapted to forest litter and contributes to global carbon recycling, degrading cellulose, hemicellulose and lignin in plant biomass...
ORGANISM(S): Agaricus bisporus 
2015-09-23 | E-GEOD-65800 | biostudies-arrayexpress
TranscriptomicsRNA expression profiles in gastric cancer and tumor-adjacent normal tissues
This is a commercially available Affymetrix chip from 16 pairs of gastric cancer and corresponding adjacent normal tissues, used for screening differentially expressed genes associated with gastric cancer.
ORGANISM(S): Homo sapiens 
2021-03-25 | E-MTAB-9990 | biostudies-arrayexpress
ProteomicsGrowth condition-dependent cell surface proteome analysis of Enterococcus faecium
Using a proteolytic shaving approach we identified differentially expressed surface exposed proteins of E. faecium cells after growth in different conditions.
ORGANISM(S): Enterococcus Faecium E1162 (ncbitaxon:535206) 
2015-07-07 | MSV000079184 | MassIVE
MetabolomicsLipid profile analysis of donkey milk during the lactation

Background: From ancient times, donkey milk (DM) has attracted much attention due to its particular properties. Donkey milk is characterized by a high level of lactose and low levels of protein and fat. However, studies investigating lipid changes in donkey milk during lactation are limited....

2025-09-06 | MTBLS12948 | MetaboLights
ProteomicsIdentification of GSDME-interacting proteins in HK-2 cells by immunoprecipitation-coupled LC-MS/MS analysis
This project aims to identify GSDME-associated proteins in human renal tubular epithelial (HK-2) cells using immunoprecipitation followed by LC-MS/MS. HK-2 cells overexpressing Flag-tagged GSDME were lysed, and protein complexes were enriched using anti-Flag antibody and Protein A/G magnetic beads. ...
ORGANISM(S): Homo Sapiens 
2025-04-12 | PXD062902 |
ProteomicsPhosphoproteome and proteome of mouse hepatocyte maturation and human hepatic reprogramming
To identify central protein kinases that potentially promote the maturation, we chemically induced liver progenitor cells (CLiPs) from mouse hepatocytes using a previously established protocol, and profiled the phosphoproteome and proteome of freshly isolated primary mouse hepatocytes (MHs) and ALBU...
ORGANISM(S): Homo Sapiens Mus Musculus 
2022-08-05 | PXD035829 |
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