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TranscriptomicsTranscription profiling of Arabidopsis NFYA5 mutant vs wild type
NFYA5 is a transcription factor important for drought resistance. Drought stress up-regulates NFYA5 gene expression not only at the transcriptional level but also at the posttranscriptional level by down-regulating the expression of miR169a that targets NFYA5 transcript for cleavage. Experiment Ove...
ORGANISM(S): Arabidopsis thaliana 
2008-10-21 | E-GEOD-12029 | biostudies-arrayexpress
TranscriptomicsGene expression data from Arabidopsis C24 wild-type and ros1-1 seedlings.
We carried out a microarray experiment by using Affymetrix Arabidopsis ATH1 Genechips in order to identify genes that show reduced expression in ros1-1 plants. 2 samples examined: C24 wild-type and ros1-1 mutant (in C24 background).
ORGANISM(S): Arabidopsis thaliana 
2013-11-23 | E-GEOD-52669 | biostudies-arrayexpress
Transcriptomicsrrp6l1-2 project
1, Using mRNA-Seq to get expression profiling of rrp6l1-2 mutant and Col-0 wild-type (WT); 2,Using MethylC-Seq to provide single-base resolution of DNA methylation status in rrp6l1-2 mutant; 3, Using small RNA-Seq(sRNA-Seq) to get small RNA profiling of rrp6l1-2 and WT mRNA-Seq: 2 samples examined, ...
ORGANISM(S): Arabidopsis thaliana 
2014-04-16 | E-GEOD-50486 | biostudies-arrayexpress
ProteomicsMapping Proteome-Wide Targets of Protein Kinases in Response to Stresses
Protein kinases are major regulatory components in almost all cellular processes in eukaryotic cells. By adding phosphate groups, protein kinases regulate the activity, localization, protein-protein interactions and other profiles of their target proteins. It is known that protein kinases such as SN...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-01-16 | PXD010053 | Pride
Phosphoproteomics Plant kinase Stress 
ProteomicsReciprocal regulation of the TOR kinase and ABA receptor balances plant growth and stress response
We found that TOR kinase regulates the plant environmental stress responses through phosphorylation at a conserved serine residue of Abscisic acid receptor PYR1/PYLs/RCARs. The phosphorylation inhibits the function of PYLs and prevents the binding of PYLs to abscisic acid and its downstream substrat...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-12-01 | PXD003746 | Pride
Snrk2 Aba receptor Raptor Abscisic acid Target of rapamycin Phosphorylation 
TranscriptomicsRequirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis
As a central component during Okazaki fragment maturation, flap endonuclease 1 (FEN1) removes the 5’ flap and maintains genomic stability. Here, FEN1 was cloned as a suppressor of transcriptional gene silencing (TGS) from a forward genetic screen. FEN1 is abundant in the root and shoot apical meri...
ORGANISM(S): Arabidopsis thaliana 
2016-05-28 | E-GEOD-79738 | biostudies-arrayexpress
TranscriptomicsIdentification and analysis of microRNAs associated with drought tolerance in cowpea
To identify novel microRNAs that are associated with drought tolerance in two different cowpea genotypes, we generated small RNA sequences from adult cowpea plants under control and dought stress treatments. Over 79 million raw reads were generated and numerous novel microRNAs are identified, includ...
ORGANISM(S): Vigna unguiculata 
2011-09-01 | E-GEOD-26402 | biostudies-arrayexpress
GenomicsMethlyC-Seq of ibm1-4
Using MethylC-Seq to provide single-base resulution of DNA methylation status in ibm1-4 mutant 1 sample examined, ibm1-4 mutant
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-48053 | biostudies-arrayexpress
TranscriptomicsmRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1
1, Using mRNA-Seq to get expression profiling of asi1-1 mutant and WT; 2, Using MethylC-Seq to provide single-base resulution of DNA methylation status in asi1-1 mutant mRNA-Seq: 2 samples examined, Col-0 wild-type with 35S-SUC2 transgene(termed as WT) and asi1-1 mutant (Col-0 background with 35S-SU...
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-48026 | biostudies-arrayexpress
TranscriptomicsHigh-throughput RNA sequencing analysis of WT, rdm16-2 and sta1 mutants
Using Illumina paired-end RNA-seq technology to examine the genome-wide gene expression and intron-retention events in WT, rdm16-2 and sta1 RNA-seq analysis of 4-week-old leaves of WT, rdm16-2 and sta1 mutants
ORGANISM(S): Arabidopsis thaliana 
2013-02-26 | E-GEOD-44635 | biostudies-arrayexpress
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