Zhu Run R - OmicsDI

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Unknown (230)
Proteomics (43)
Metabolomics (31)
Transcriptomics (16)
Genomics (2)

Organisms

Homo sapiens (32)
Mus musculus (17)
Danio rerio (2)
Gallus gallus (1)
Sus scrofa (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Caenorhabditis elegans (1)
Capra hircus (1)
Carassius gibelio (1)
Chlorocebus aethiops (1)
Ctenopharyngodon idella (1)
Felis catus (1)
Ovis aries (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)
Xenopus tropicalis (1)
Zea mays (1)

Repository

pride (41)
MetaboLights (31)
biostudies-arrayexpress (18)
iProX (1)
MassIVE (1)

Tissue

Cell culture (8)
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Disease

Breast cancer (3)
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Disease free (2)
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Eye disease (1)
Neuropathic pain (1)
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Renal cell carcinoma (1)
Sepsis (1)
Type 2 diabetes mellitus (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (41)
Mass spectrometry (28)
Shotgun proteomics (21)
Bottom-up proteomics (9)
Data-independent acquisition (6)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
Top-down proteomics (2)
NMR spectroscopy (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
6530 Q-TOF LC/MS (Agilent) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina NovaSeq X (1)
LTQ Orbitrap Velos (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - - - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB sciex) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Wates I-Class/XEVO-G2 XS QTOF (1)
Xevo G2-XS QTOF (Waters) (1)

Publication Date

2026 (11)
2019 (10)
2022 (10)
2025 (9)
2021 (9)
2023 (7)
2020 (6)
2014 (5)
2024 (5)
2017 (4)
2010 (3)
2009 (3)
2018 (3)
2013 (2)
2015 (1)
2012 (1)
2011 (1)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:17368 (11)
CHEBI:16704 (10)
CHEBI:17596 (10)
CHEBI:15891 (9)
CHEBI:16335 (9)
CHEBI:16359 (9)
CHEBI:27897 (9)
CHEBI:16708 (8)
CHEBI:16750 (8)
CHEBI:17562 (8)
CHEBI:17568 (8)
CHEBI:28790 (8)
CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:16015 (7)
CHEBI:16610 (7)
CHEBI:16811 (7)
CHEBI:16919 (7)
CHEBI:17533 (7)
CHEBI:18237 (7)
CHEBI:24813 (7)
CHEBI:28834 (7)
CHEBI:73024 (7)
CHEBI:7916 (7)
CHEBI:10072 (6)
CHEBI:15843 (6)
CHEBI:16020 (6)
CHEBI:16040 (6)
CHEBI:16235 (6)
CHEBI:16411 (6)

Metabolite Name

Cytidine (7)
Guanosine (7)
Histamine (7)
Inosine (7)
Taurine (7)
Adenosine (6)
Hypoxanthine (6)
Riboflavin (6)
Uracil (6)
Uridine (6)
Adenine (5)
Betaine (5)
Cholic acid (5)
Choline (5)
Creatine (5)
Deoxycholic acid (5)
Guanine (5)
Xanthosine (5)
Benzaldehyde (4)
Cytosine (4)
Dehydroepiandrosterone sulfate (4)
Glutathione (4)
Glycine (4)
Indole (4)
L-Phenylalanine (4)
L-Tyrosine (4)
N-Acetyl-L-methionine (4)
N6,N6,N6-Trimethyl-L-lysine (4)
Purine (4)
Serotonin (4)

Study type

Transcription profiling by array (7)
RNA-seq of non coding RNA (4)
RNA-seq of coding RNA (3)
Other (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (44)
2024 (37)
2023 (34)
2021 (30)
2022 (24)
2020 (16)
2026 (11)
2019 (8)
2018 (7)
2014 (6)
2013 (6)
2015 (5)
2017 (4)
2016 (4)
2010 (3)
2009 (3)
2012 (2)
2011 (2)
2008 (1)
2006 (1)

Lab affiliation

1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Science Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Baylor College of Medicine (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Cancer proteomics, Oncology-Pathology department, Karolinska Institutet (1)
Cardiothoracic Surgery, Stanford University, USA (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
College of Life Science, Northwest University (1)
College of Veterinary Medicine, Shanxi Agricultural University, Taigu, Shanxi Province 030801, People’s Republic China. (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA (1)
Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States (1)
Department of Chemistry, Vanderbilt University (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester MN (1)
Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT, USA (1)
Division of Metabolism, Endocriology & Diabetes and Department of Internal Medicine, University of Michigan, Ann Arbor, MI, 48105, USA (1)
Heart Center, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China (1)
Institute of Hydrobiology, Chinese Academy of Sciences (1)
Institute of Molecular Systems Biology, ETH Zurich, Switzerland (1)
Izabela Sumara, Institute of Genetics and Molecular and Cellular Biology (IGBMC), Illkirch, France (1)
Lab Head of Necker Proteomics Platform (1)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands (1)
Michigan State University (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)
Professor, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Alberta, Canada (1)
Proteomics Unit Navarrabiomed-Proteored-ISCIII (Pamplona, Spain) (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)

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Targeted Intracellular Copper Reservoir Enhances Liver Cancer Immunotherapy.

Not available

S-EPMC12423925 | biostudies-literature

R-CHIE: a web server and R package for visualizing RNA secondary structures.

Not available

S-EPMC3384350 | biostudies-literature

Protective Effects of Different Selenium Green Tea Polysaccharides on the Development of Type 2 Diabetes in Mice.

Not available

S-EPMC10706338 | biostudies-literature

SRAdb: query and use public next-generation sequencing data from within R.

Not available

S-EPMC3560148 | biostudies-literature

Reduction of colitis in mice by chemically programmed supramolecular nanoassemblies of vitamin-lipid conjugates.

Not available

S-EPMC11934663 | biostudies-literature

The clinical characteristics and surgical management experience of ovarian fibroma/fibrothecoma in premenopausal women.

Not available

S-EPMC12459461 | biostudies-literature

Collagen denaturation in post-run Achilles tendons and Achilles tendinopathy: In vivo mechanophysiology and magnetic resonance imaging.

Not available

S-EPMC11446262 | biostudies-literature

Ion mobility-based sterolomics reveals spatially and temporally distinctive sterol lipids in the mouse brain

Aberrant sterol lipid metabolism is associated with physiological dysfunctions in the aging brain and aging-dependent disorders such as neurodegenerative diseases. There is an unmet demand to comprehensively profile sterol lipids spatially and temporally in different brain regions during aging. Here...

2021-05-24 | MTBLS2457 | MetaboLights

Proteomic characterization and comparison of spermatozoa proteomes between ram (Ovis. aries) and buck (Capra. hircus) using a data-independent acquisition-mass spectrometry (DIA-MS)

Artificial insemination in small ruminants is most commonly performed using fresh semen due to the low fertility rates typically achieved with frozen spermatozoa. Usually, when developing and applying assisted reproductive technologies, sheep and goats are often lumped together as one specie. In ord...

ORGANISM(S): Ovis aries Capra hircus (Goat)

2020-05-26 | PXD014095 | Pride

Genomic Characterization of a Carbapenem-Resistant Raoultella planticola Strain Co-Harboring bla_IMP-4 and bla_SHV-12 Genes.

Not available

S-EPMC10981896 | biostudies-literature

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322 Results

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OmicsDI is part of the ELIXIR infrastructure

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