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TranscriptomicsRNA-seq of human tissues
RNA-seq was performed of tissue samples from human individuals representing different tissues in order to study the human tissue transcriptome. This submission contains 14 samples used in the paper A proteogenomics workflow integrating discovery, curation and validation reveals human novel protein c...
ORGANISM(S): Homo sapiens 
2017-08-01 | E-MTAB-5782 | biostudies-arrayexpress
ProteomicsProteomics-Based Approach Reveals the Involvement of Spliceosomal Components SF3B and SerpinB9 in Dermatofibrosarcoma Protuberance
Dermatofibrosarcoma protuberans (DFSP) is a rare cutaneous soft tissue sarcoma which prone to high recurrence rate, especially the high grade sub-type. We applied label-free proteomics quantification to profile the molecular signatures of DFSP tumors in contrast to adjacent normal tissues.
ORGANISM(S): Homo sapiens (Human) 
2026-09-09 | PXD074336 | Pride
Dermatofibrosarcoma protuberance Sf3b Serpinb9 
ProteomicsIntegrative genome annotation of Malassezia sympodialis
The skin commensal yeast Malassezia is associated with several skin disorders. To establish a reference resource, we sought to determine the complete genome sequence of Malassezia sympodialis and identify its protein-coding genes. A novel genome annotation workflow combining RNA sequencing, proteomi...
ORGANISM(S): Malassezia sympodialis (strain ATCC 42132) (Atopic eczema-associated yeast) 
2016-12-20 | PXD003773 | Pride
Clinical isolates Malassezia sympodialis Lc-ms/ms 
ProteomicsSubCellBarcode: Scalable proteome-wide mapping of protein localization and relocalization
We have devised a simple and robust LC-MS/MS compatible protocol for subcellular protein localization studies. Here, we combine it with in depth proteome profiling and utilize the resulting dataset to predict the subcellular localization of more than 12000 proteins in 5 human cancer cell lines. The ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-02-17 | MSV000086899 | MassIVE
Proteomics,MultiomicsHiRIEFII proteomics and proteogenomics of A431 cells and five histologically normal tissues
High Resolution Isoelectric Focusing (HiRIEF) LC-MS was used to analyze samples from the human A431 cell line and also samples of histologically normal tissues. The high analytical depth afforded by HiRIEF permitted proteogenomics on these two sample sets (A431 cells and normal tissues). The A431 d...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-10-04 | MSV000083000 | MassIVE
ProteomicsH.sapiens - Plasma, iBAQ (Pernemalmetal,elife.2019)
abundance based on iBAQ, Interaction consistency score: 4.2, Coverage: 11
ORGANISM(S): 9606 
2019-00-00 | 2334528786 | PAXDB
ProteomicsE.Coli spike in to human cell line MCF-7
Spike in of 3 different amounts of E.Coli to human cell line MCF-7 with TMT10plex quantification.
ORGANISM(S): Homo Sapiens (human) 
2020-03-28 | PXD013277 | JPOST Repository
ProteomicsTumor and adjacent normal tissue
Proteome characterization of 5 breast tumors and adjacent normal tissue using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD011385 | JPOST Repository
ProteomicsBreast cancer proteome landscape
Proteome characterization of 45 breast tumors using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD008841 | JPOST Repository
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