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ProteomicsTransfer of the high-quality sugar metabolic model of Aspergillus niger is reliable within the same fungal phylum, but limited for fungi of other phyla
Proteomic data from fungi; intracellular-proteome of five of the studied fungi (A. niger, A. nidulans, P. subrubescens, T. reesei and P. chrysosporium) grown on nine different monosaccharide conditions (L-arabinose, D-fructose, D-galacturonicAcid, D-galactose, D-glucuronicAcid, D-glucose, D-mannose,...
ORGANISM(S): Aspergillus Niger, Aspergillus Nidulans, Penicillium Subrubescens, Trichoderma Reesei, Phanerochaete Chrysosporium 
2022-10-05 | MSV000090477 | MassIVE
MetabolomicsGNPS - Transfer of the high-quality sugar metabolic model of Aspergillus niger is reliable within the same fungal phylum, but limited for fungi of other phyla
Validation of metabolic models, extrapolated from the reference sugar catabolism genetic network of Aspergillus niger by using an orthology-based approach, of evolutionarily diverse fungi.
ORGANISM(S): Trichoderma Reesei (ncbitaxon:51453) Penicillium Subrubescens (ncbitaxon:1316194) Aspergillus Niger (ncbitaxon:5061) Phanerochaete Chrysosporium Rp-78 (ncbitaxon:273507) Aspergillus Nidulans (ncbitaxon:162425) 
MSV000090441 | GNPS
ProteomicsWidespread glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens
Carbon catabolite repression (CCR) occurs in the presence of sufficient concentrations of easy metabolizable carbon sources (e.g. glucose), down-regulating the expression of genes encoding enzymes involved in the breakdown of complex carbon sources. The extent of CCR at a global level is unknown in ...
ORGANISM(S): Dichomitus squalens 
2019-10-07 | PXD014774 | Pride
Cazymes Dichomitus Carbon catabolite repression Regulation 
ProteomicsTransfer of the high-quality sugar metabolic model of Aspergillus niger is reliable within the same fungal phylum, but limited for fungi of other phyla
Validation of metabolic models, extrapolated from the reference sugar catabolism genetic network of Aspergillus niger by using an orthology-based approach, of evolutionarily diverse fungi.
ORGANISM(S): Trichoderma Reesei (ncbitaxon:51453) Penicillium Subrubescens (ncbitaxon:1316194) Aspergillus Niger (ncbitaxon:5061) Phanerochaete Chrysosporium Rp-78 (ncbitaxon:273507) Aspergillus Nidulans (ncbitaxon:162425) 
MSV000090441 | MassIVE
MetabolomicsGNPS - Experimental validation of a central carbon metabolic model in Aspergillus niger to enable metabolic engineering of a fungal cell factory
The influence of selected pentose catabolic pathway (PCP) deletion strains on growth of plant biomass and re-routing of sugar catabolism was addressed to gain a better understanding of the flexibility of the fungus Aspergillus niger in using plant biomass-derived monomers. The transcriptome, metabol...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2020-12-17 | MSV000086614 | GNPS
ProteomicsExperimental validation of a central carbon metabolic model in Aspergillus niger to enable metabolic engineering of a fungal cell factory
The influence of selected pentose catabolic pathway (PCP) deletion strains on growth of plant biomass and re-routing of sugar catabolism was addressed to gain a better understanding of the flexibility of the fungus Aspergillus niger in using plant biomass-derived monomers. The transcriptome, metabol...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2020-12-17 | MSV000086614 | MassIVE
ProteomicsThe physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates
In this project we evaluated the physiology of different agaricus bisporus strains during growth in compost, in particular with respect to plant biomass d egradation and carbon catabolism.
ORGANISM(S): Agaricus bisporus (White button mushroom) 
2018-01-08 | PXD007189 | Pride
Agaricus bisporus Physiology Cazy genes Compost 
ProteomicsSexual crossing of thermophilic fungus Myceliophthora heterothallica improved enzymatic degradation of sugar beet pulp
Enzymatic degradation of plant biomass requires a complex mixture of many different enzymes. Like most fungi, thermophilic Myceliophthora species therefore have a large set of enzymes targeting different linkages in plant polysaccharides. The majority of these enzymes have not been functionally char...
ORGANISM(S): Myceliophthora heterothallica 
2016-02-25 | PXD003130 | Pride
Saccharification Progeny Sugar beep pulp Cazy enzymes Myceliophthora heterothallica Plant biomass 
ProteomicsComparative proteomics of plant biomass degradation by the ascomycete fungus Podospora anserine
The project compares the production of plant biomass degrading enzymes by Podospora anserina during growth on different feed stocks.
ORGANISM(S): Podospora anserina 
2017-02-13 | PXD005170 | Pride
Induction Cellulase Pectinase Plant biomass degradation Xylanase Fungal enzymes 
ProteomicsAn Aspergillus niger colony locally adapts its molecular responses to spatially separated substrates
A. niger colony sections grown on spatially separated substrates (glucose, wheat bran, sugar beet pulp) using transcriptomics, proteomics and metabolomics showed high diversity and plasticity within the colony.
ORGANISM(S): Aspergillus niger 
2020-05-26 | PXD010431 | Pride
Carbon source composition Lignocellulose Cazymes 
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