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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Longitudinal Single-Cell Transcriptomic Profiling of the Peripheral Immune Response in Ischaemic Stroke

ABSTRACT: This dataset consists of single-cell RNA sequencing (scRNA-seq) data derived from Peripheral Blood Mononuclear Cells (PBMCs) of two ischaemic stroke patients (P66 and P79). The study follows a longitudinal design to identify temporal changes in the systemic immune response, with samples collected at two timepoints: the acute in-patient stage (V1) and at 6-9 months follow-up (V3). Here, four samples (P66_V1, P66_V3, P79_V1, P79_V3) were multiplexed using the 10x Genomics CellPlex protocol and processed as a single pool. Approximately 33,000 cells were loaded onto a 10x Chromium Controller using the Chromium Next GEM Single Cell 5' Reagent Kit. This specific library represents the Gene Expression (GEX) portion of a multi-modal immune profiling experiment. The primary objective of this study was to assess the dynamics of the circulating immune compartment following ischaemic stroke.

INSTRUMENT(S): Scanpy (hash 98de5d1a), 10xGenomics Chromium 3'v3, Illumina NovaSeq 6000, CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies), Chromium Next GEM Single Cell 5' Reagent Kits (10x Genomics)

ORGANISM(S): Homo sapiens

SUBMITTER: Rufus Daw

PROVIDER: E-MTAB-16654 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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