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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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ChIP-seq of definitive endoderm differentiation of human embryonic stem cells in early G1 phase of the cell cycle

ABSTRACT: The experiment was designed to investigate histone modification changes during cell cycle progression of human embryonic stem cells (hESCs) during definitive endoderm differentiation. For this, FUCCI hESCs were sorted in Early G1 (EG1), and differentiation into endoderm was performed for up to 72 hours with a combination of cytokines as described in Pauklin and Vallier (2013) and Pauklin et al. (2016). ChIP-seq was generated at 12-hour and 36-hour time-points for H3K4me3, H3K27ac, H3K4me1, H3K36me3 and H3K27me3. Library preparation and sequencing were performed at the Wellcome Sanger Institute next-generation sequencing facility on Illumina HiSeq 2000, 2 x 75bp paired-end reads. ChIP-seq data from other time-points (0h, 24h, 48h and 72h) of the same experimental set-up is available elsewhere (GEO DataSet, accession PRJNA593217). All processed ChIP-seq data is publicly available at http://ngs.sanger.ac.uk/production/endoderm

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens

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PROVIDER: E-MTAB-9276 | biostudies-arrayexpress |

SECONDARY ACCESSION(S): E-MTAB-9194

REPOSITORIES: biostudies-arrayexpress

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