Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-seq.

ABSTRACT: Eukaryotic genomes encode a large number of RNA-binding proteins, which play critical roles in many aspects of gene regulation. To functionally characterize these proteins, a key step is to map their interactions with target RNAs. UV crosslinking and immunoprecipitation coupled with high-throughput sequencing has become the standard method for this purpose. Here we describe the detailed procedure that we have used to characterize the protein-RNA interactions of the mRNA 3' processing factors.

SUBMITTER: Yao C 

PROVIDER: S-EPMC4412157 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature