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Optical tissue clearing and machine learning can precisely characterize extravasation and blood vessel architecture in brain tumors.

ABSTRACT: Precise methods for quantifying drug accumulation in brain tissue are currently very limited, challenging the development of new therapeutics for brain disorders. Transcardial perfusion is instrumental for removing the intravascular fraction of an injected compound, thereby allowing for ex vivo assessment of extravasation into the brain. However, pathological remodeling of tissue microenvironment can affect the efficiency of transcardial perfusion, which has been largely overlooked. We show that, in contrast to healthy vasculature, transcardial perfusion cannot remove an injected compound from the tumor vasculature to a sufficient extent leading to considerable overestimation of compound extravasation. We demonstrate that 3D deep imaging of optically cleared tumor samples overcomes this limitation. We developed two machine learning-based semi-automated image analysis workflows, which provide detailed quantitative characterization of compound extravasation patterns as well as tumor angioarchitecture in large three-dimensional datasets from optically cleared samples. This methodology provides a precise and comprehensive analysis of extravasation in brain tumors and allows for correlation of extravasation patterns with specific features of the heterogeneous brain tumor vasculature.

SUBMITTER: Kostrikov S

PROVIDER: S-EPMC8249617 | biostudies-literature | 2021 Jul

REPOSITORIES: biostudies-literature

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Optical tissue clearing and machine learning can precisely characterize extravasation and blood vessel architecture in brain tumors.

Kostrikov Serhii S Johnsen Kasper B KB Braunstein Thomas H TH Gudbergsson Johann M JM Fliedner Frederikke P FP Obara Elisabeth A A EAA Hamerlik Petra P Hansen Anders E AE Kjaer Andreas A Hempel Casper C Andresen Thomas L TL

Communications biology 20210701 1

Precise methods for quantifying drug accumulation in brain tissue are currently very limited, challenging the development of new therapeutics for brain disorders. Transcardial perfusion is instrumental for removing the intravascular fraction of an injected compound, thereby allowing for ex vivo assessment of extravasation into the brain. However, pathological remodeling of tissue microenvironment can affect the efficiency of transcardial perfusion, which has been largely overlooked. We show that ...[more]

PMID: 34211069

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Project description:Endowed with the superior computing speed and energy efficiency, optical neural networks (ONNs) have attracted ever-growing attention in recent years. Existing optical computing architectures are mainly single-channel due to the lack of advanced optical connection and interaction operators, solving simple tasks such as hand-written digit classification, saliency detection, etc. The limited computing capacity and scalability of single-channel ONNs restrict the optical implementation of advanced machine vision. Herein, we develop Monet: a multichannel optical neural network architecture for a universal multiple-input multiple-channel optical computing based on a novel projection-interference-prediction framework where the inter- and intra- channel connections are mapped to optical interference and diffraction. In our Monet, optical interference patterns are generated by projecting and interfering the multichannel inputs in a shared domain. These patterns encoding the correspondences together with feature embeddings are iteratively produced through the projection-interference process to predict the final output optically. For the first time, Monet validates that multichannel processing properties can be optically implemented with high-efficiency, enabling real-world intelligent multichannel-processing tasks solved via optical computing, including 3D/motion detections. Extensive experiments on different scenarios demonstrate the effectiveness of Monet in handling advanced machine vision tasks with comparative accuracy as the electronic counterparts yet achieving a ten-fold improvement in computing efficiency. For intelligent computing, the trends of dealing with real-world advanced tasks are irreversible. Breaking the capacity and scalability limitations of single-channel ONN and further exploring the multichannel processing potential of wave optics, we anticipate that the proposed technique will accelerate the development of more powerful optical AI as critical support for modern advanced machine vision.

Dataset Information

Optical tissue clearing and machine learning can precisely characterize extravasation and blood vessel architecture in brain tumors.

Publications

Optical tissue clearing and machine learning can precisely characterize extravasation and blood vessel architecture in brain tumors.

Similar Datasets

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