Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E293e036-64d4-4964-8d7b-dda98c392143 - samples

ABSTRACT: This dataset contains log2(TPM + 1) transformed counts for the 823 tumor samples profiled by RNAseq.

PROVIDER: EGAD00001006618 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

8c328360-cab0-4718-b319-3978511dcca1 - samples

Project description:This dataset contains log2(TPM + 1) for 271 tumor samples profiled by RNA-seq for the entire transcriptome.

| EGAD00001006927 | EGA

7c88a35c-7d54-401a-88d1-61e493ed227a - samples

Project description:This dataset contains log2(TPM + 1) for 192 tumor samples profiled by RNA-seq for the entire transcriptome for samples originating from POPLAR (GO28753).

| EGAD00001008390 | EGA

90f7cb75-530e-4e59-9d82-71cc397da210 - samples

Project description:This dataset contains log2(TPM + 1) for 699 tumor samples profiled by RNA-seq for the entire transcriptome for samples originating from OAK (GO28915).

| EGAD00001008391 | EGA

138ff350-f3cd-4e2f-8310-4592f0a3fed2 - samples

Project description:This dataset contains log2(TPM + 1) for 271 tumor samples profiled by RNA-seq for the subset of genes used for validation of the NMF cluster assignments.

| EGAD00001006928 | EGA

23c99828-a8ad-47f0-b0f2-e7ace4f05fd7 - samples

Project description:This dataset contains FASTq files for tumors from the 823 patients profiled by RNAseq.

| EGAD00001006619 | EGA

Single cell RNA seq analysis of the chicken basilar papilla following in vivo aminoglycoside induced hair cell ablation

Project description:scRNAseq of chicken basilar papilla at P7 and P11 as controls, and 12, 16, 20, 24, 30, 38, 48, and 96 hours post sisomicin administration. Cells were isolated using FACS and underwent Smartseq-2 protocol for single cell RNA seq with paired-end sequencing. Processed data file contains SingleCellExperiment object with all metadata. The dataset has undergone quality control using scater package in R, normalized using SCnorm, and normalized counts were log2 transformed (found in RDS file here). Only genes expressed in at least 3 cells are included for a total of 16,302 genes. A total of 2,625 high quality cells are in the normalized dataset. Raw sequence data for all 3,831 sequenced cells pre-quality control is also included.

2023-11-21 | GSE240187 | GEO

289a561c-a53e-41af-a150-43a78fd6ce74 - samples

Project description:TPM matrices of counts from RNAseq data for IMvigor010 from bulk pre-treatment tumors.

| EGAD00001007653 | EGA

c6a3480a-34b1-4b1d-bfff-0c323a97217d - samples

Project description:TPM matrices of counts from RNA sequencing (RNAseq) from longitudinal CD138+ enriched BM fractions.

| EGAD00001011144 | EGA

9c1776ab-2ed8-4970-8fa4-95980414dfdf - samples

Project description:TPM matrices of counts from RNA sequencing (RNAseq) from baseline CD138+ enriched BM fractions.

| EGAD00001011148 | EGA

Single cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from human PSCs

Project description:This dataset contains single cell RNAseq and CITE-seq of human hematopoietic progenitors differentiated in vitro from hiPSCs. We provide processed files corresponding to counts and metadata for the RNA-seq and the CITE-seq. For the RNA-seq dataset suspension CD235a-CD43+live cells collected at day 13 of differentiation were analysed. For the CITE-seq dataset, suspension CD235a-live cells and adherent CD31+ and CD31- were analysed. ADT tags for membrane markers are also contained in the dataset. More details are available in Fidanza et al, Blood 2020.

2020-07-06 | E-MTAB-9295 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data