Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Long non-coding RNAs and mRNAs profiling during spleen development in pig

ABSTRACT: We describe a total 222.19 Gb of pig RNA-seq sequences generated from the 18 libraries

OTHER RELATED OMICS DATASETS IN: PRJNA416652

ORGANISM(S): Sus scrofa domesticus Sus scrofa

PROVIDER: GSE106381 | GEO | 2018/02/16

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Long non-coding RNAs and mRNAs profiling during spleen development in pig.

Project description: Not available

| S-EPMC5851557 | biostudies-literature

Long non-coding RNAs and mRNAs profiling during spleen development in pig

Project description:Long non-coding RNAs and mRNAs profiling during spleen development in pig

| PRJNA416652 | ENA

Genome-wide analysis of coding and long non-coding RNAs involved in cabbage cuticular wax biosynthesis

Project description:We report the application of high-throughput RNA sequencing for comparing the expression levels of the coding and long noncoding RNAs (lncRNAs) in leaf samples from a glossy mutant nwgl and its wild-type (WT) in cabbage. By obtaining over 163.35 Gb cleaned data generated from six libraries (on average, more than 26.48 Gb clean data for each sample replicate), we identified 1247 differential expressed genes (DEGs) and 148 differential expressed lncRNAs in nwgl leaves relative to WT. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed that the DEGs and cis-regulated target genes for differential expressed lncRNAs were significantly enriched in wax and lipid biosynthetic and/or metabolic processes. Our results provide the novel foundation to explore the complex molecular basis of cuticular wax biosynthesis.

2019-07-26 | GSE130405 | GEO

Profiling expression of coding genes, long noncoding RNAs, and circular RNAs in the rice photo-thermosensitive genic male sterile line Wuxiang S

Project description:In order to systematically identify the possible regulatory roles of (long nocoding RNAs) lncRNAs and (circular RNAs) cirRNAs in the rice photo-thermosensitive genic male sterile (PTGMS) line that were involved in fertility transition, 18 RNA libraries from rice young panicles of the Wuxiang S sterile line rice (WXS (S)) and its fertile line rice (WXS (F)) at the pollen mother cell (PMC) formation stage (P2), the meiosis stage (P3), and the microspore formation stage (P4) were constructed, with three biological replicates for each condition. These libraries were sequenced using an Illumina Hiseq 2500 platform, and approximately 214.54 Gb clean reads were generated. we performed genome-wide identification and characterization of lncRNAs circRNAs using high-throughput strand-specific RNA sequencing (ssRNA-seq) technology and bioinformatics tools to investigate the expression profiles of circRNAs in the PTGMS rice line WXS and their potential roles in the fertility transition.A total of 3948 lncRNAs and 9994 circRNAs were indentifiled in WXS rice, and our findings clearly revealed that lnRNAs and circRNAs might be endogenous noncoding regulators of flower and pollen development in the PTGMS rice line.

2021-05-30 | GSE125608 | GEO

Single-cell short- and long-read transcriptomic atlas of seven reproductive-axis tissues in male Baoshan pig

Project description:Single-cell transcriptomic data were generated from seven reproductive-axis tissues of an 18-month-old male Baoshan pig, including hypothalamus, pituitary, prostate, bulbourethral gland, seminal vesicle, epididymis, and testis. To characterize both gene-expression profiles and transcript isoform diversity across these tissues, single-cell short-read libraries were sequenced on an Illumina platform and single-cell long-read libraries were sequenced on an Oxford Nanopore platform. Short-read data were processed with Cell Ranger, whereas long-read data were processed with FLAMES and further assessed for isoform structure. The dataset provides cell-level gene expression matrices, transcript/isoform-level quantification, isoform annotation files, and accompanying cell metadata. These data may facilitate studies of cellular heterogeneity and transcript isoform usage across the porcine reproductive axis.

2026-07-04 | GSE326370 | GEO

Integrated analysis of long non-coding RNAs and mRNAs associated with peritendinous fibrosis.

Project description: Not available

| S-EPMC6300459 | biostudies-literature

Long RNAs expression profiling of 20 Italian Large White pig backfat

Project description:We report the application of Illumina RNA sequencing for characterization and discovery of genes and transcripts in Italian Large Whtie pig backfat tissue.

2016-03-15 | GSE68007 | GEO

Long RNAs expression profiling of 20 Italian Large White pig backfat

Project description:We report the application of Illumina RNA sequencing for characterization and discovery of genes and transcripts in Italian Large Whtie pig backfat tissue. RNAs sequencing for long RNA quantification, discovery, characterisation and differential expression evaluation.

2016-03-15 | E-GEOD-68007 | biostudies-arrayexpress

Expression Profiling of mRNAs and Long Non-Coding RNAs in Aged Mouse Olfactory Bulb.

Project description: Not available

| S-EPMC5437011 | biostudies-literature

Changing expression profiles of long non-coding RNAs, mRNAs and circular RNAs in ethylene glycol-induced kidney calculi rats.

Project description: Not available

| S-EPMC6131827 | biostudies-literature