Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide map of H4K8ac in Plasmodium falciparum

ABSTRACT: P. falciparum H4K8ac ChIP-seq

ORGANISM(S): Plasmodium falciparum

PROVIDER: GSE93145 | GEO | 2017/07/24

SECONDARY ACCESSION(S): PRJNA360130

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Plasmodium falciparum

Project description:Role of H4K8ac in P. falciparum life cycle [ChIP]

| PRJNA328407 | ENA

Plasmodium falciparum

Project description:Genome-wide map of H4K8ac in Plasmodium falciparum

| PRJNA360130 | ENA

Plasmodium falciparum

Project description:Role of H4K8ac in P. falciparum life cycle [gene expression]

| PRJNA328408 | ENA

Role of H4K8ac in P. falciparum life cycle [ChIP]

Project description:Study of chromatin changes of P. falciparum in response to changes in the levels of histone H4 acetylations especially H4K8ac using chromatin immunoprecipitation coupled to microarray chip (ChIP-on-chip)

2017-07-25 | GSE84083 | GEO

Genome-wide analysis of transcription factor PfNF-YB in Plasmodium falciparum.

Project description:PfNF-YB is a transcription factor of Plasmodium falciparum and is known as a CCAAT-box-binding subunit B. PfNF-YB belongs to NF-Y complex family that is conserved from yeast to human. PfNF-YB is highly expressed in schizont stage and co-localized at the nucleus in mature form during intraerythrocytic stage. We found that melatonin and cAMP second messenger can modulate the PfNF-YB expression in P. falciparum. To better understand the function of PfNF-YB in P. falciparum we proposed to perform chromatin immunoprecipitation (ChIP) of PfNF-YB together with chromatin profiling by ChIP-on-chip analysis. The results showed that PfNF-YB binds to CCAAT of several genes in schizont stage.

2013-07-16 | GSE48894 | GEO

Genome-wide binding sites of MCM6 in Plasmodium falciparum

Project description:Genome-wide ChIP-sequencing analysis of PfMCM6 was carried out in trophozoite stage parasites using PfMCM6 antibodies. We have observed that PfMCM6 is highly enriched at the exon regions. Moreover, PfMCM6 was also found in promoter-TSS, transcription termination site (TTS), and intergenic regions in minimal proportion. This study shed some light on PfMCM6 binding sites in Plasmodium falciparum genome.

2023-07-29 | GSE224073 | GEO

Genome-wide analysis of transcription factor PfNF-YB in Plasmodium falciparum.

Project description:PfNF-YB transcription factor is highly expressed and co-localized at the nucleuos in mature form during intra-erytrocytic stages. melatonin and cAMP second messenger can modulate the PfNF-YB expression in P. falciparum erythrocyte stages. Chromatin immunoprecipitation (ChIP) of PfNF-YB together with chromatin profiling by ChIP-on-chip analysis demonstrated that PfNF-YB binding to CCAAT of several genes in schizont stage. comparison of PfNF-YB vs control beads and IgG

2013-07-16 | E-GEOD-48894 | biostudies-arrayexpress

Role of H4K8ac in P. falciparum life cycle [gene expression]

Project description:Transcriptional analaysis of P. falciparum in response to changes in the levels of histone H4 acetylations especially H4K8ac

2017-07-25 | GSE84082 | GEO

Identification of genome-wide binding sites of Plasmodium falciparum GCN5-acetyltransferase

Project description:Genome-wide ChIP-sequencing analysis of PfGCN5 was carried out in asynchronous stage (trophozoite and schizont stage enriched) parasites using PfGCN5 antibodies. We have observed that PfGCN5 is majorly associated with promoter regions of genes. Moreover, a uniform distribution was found in exons, transcription termination site, and intergenic regions. This study shed some light on PfGCN5 binding sites on Plasmodium falciparum genome.

2020-01-01 | GSE142803 | GEO

Plasmodium falciparum NF54 Transcriptome

Project description:Transcriptomic Analysis of Cultured Sporozoites of P. falciparum RNA-seq reads from each of three developmental stages (2 replicates per sample) were mapped to the reference Plasmodium falciparum genome, and gene expression levels were calculated for each sample.

2013-12-03 | E-GEOD-52867 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data