Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tissue-specific DNase-seq Time Course during Drosophila melanogaster embryogenesis

ABSTRACT: Tissue-specific DNase-seq Time Course during Drosophila melanogaster embryogenesis

PROVIDER: PRJEB37090 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Tissue-specific DNase-seq Time Course during Drosophila melanogaster embryogenesis

Project description:Chromatin accessibility mapping by DNase-seq on whole embryo and FACS-isolated cell populations during Drosophila melanogaster embryogenesis at 2-4 hrs, 4-6 hrs, 6-8 hrs, 8-10 hrs and 10-12 hrs after egg-laying. Note that the two 8 bases long UMIs clipped from read1 and read2 are present in the FastQ file header (followed by the 8 bp long invariant sample barcode)

2020-10-30 | E-MTAB-8881 | biostudies-arrayexpress

Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

Project description:Chromatin accessibility mapping by DNase-seq on FACS-isolated cell populations during Drosophila melanogaster embryogenesis (6-8 hrs after egg-laying)

2018-01-29 | E-MTAB-5999 | biostudies-arrayexpress

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

Project description:Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

| PRJEB10089 | ENA

Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

Project description:Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis

| PRJEB22080 | ENA

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

Project description:Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

| PRJEB40271 | ENA

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis

Project description:DNase-seq over 3 matching developmental time points in Drosophila melanogaster and Drosophila virilis embryos was performed. The aim is to assess conservation of hypersensitive regions between two distantly related species. Samples were sequenced using Illumina HiSeq.

2019-10-19 | E-MTAB-3797 | biostudies-arrayexpress

Time course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II

Project description:DNase-seq over 2 matching developmental time points in Drosophila melanogaster and Drosophila virilis embryos was performed. The aim is to assess conservation of hypersensitive regions between two distantly related species. Samples were sequenced using Illumina NextSeq. This Study is an extension to the previously published Study E-MTAB-3797.

2021-05-21 | E-MTAB-9480 | biostudies-arrayexpress

Time course Pho/dSfmbt Chromatin Immunoprecipitation on Drosophila melanogaster embryos during embryogenesis

Project description:Time course Pho/dSfmbt Chromatin Immunoprecipitation on Drosophila melanogaster embryos during embryogenesis

| PRJEB13498 | ENA

The developmental proteome of Drosophila melanogaster (embryogenesis)

Project description:Drosophila melanogaster is a well-studied genetic model organism with several large-scale transcriptome resources. Here we investigate 7,952 proteins during the fly life cycle from embryo to adult and also provide a high-resolution temporal time course proteome of 5,458 proteins during embryogenesis. We use our large scale data set to compare transcript/protein expression, uncovering examples of extreme differences between mRNA and protein abundance. In the embryogenesis proteome, the time delay in protein synthesis after transcript expression was determined. For some proteins, including the transcription factor lola, we monitor isoform specific expression levels during early fly development. Furthermore, we obtained firm evidence of 268 small proteins, which are hard to predict by bioinformatics. We observe peptides originating from non-coding regions of the genome and identified Cyp9f3psi as a protein-coding gene. As a powerful resource to the community, we additionally created an interactive web interface (http://www.butterlab.org) advancing the access to our data.

2017-04-07 | PXD005713 | Pride

Drosophila melanogaster proteome dynamics during embryogenesis - 1

Project description:In this study we use a combination of proteomics Label-Free quantification methods to monitor protein expression changes over a time course of more than 20 hours of embryo development in Drosophila melanogaster.

2016-04-11 | PXD003178 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data