Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse lung proteome response to a wild type infectious clone of H7N9 Influenza virus and mutants

ABSTRACT: Proteomic data from mouse lung; Treated with wild-type and mutant H7N9 and mockulum; Time points 1, 2, 4 & 7 days; 5 biological replicates

INSTRUMENT(S):

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Lung

SUBMITTER: Matthew Monroe

LAB HEAD: Thomas Metz

PROVIDER: PXD002982 | Pride | 2015-10-06

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	OMICS_IM102_691_1d_Protein_2_009_Run1_16Jan15_Falcon_14-10-15.mgf	Mgf
	OMICS_IM102_691_1d_Protein_2_009_Run1_16Jan15_Falcon_14-10-15.pride.mgf.gz	Mgf
	OMICS_IM102_691_1d_Protein_2_009_Run1_16Jan15_Falcon_14-10-15.raw	Raw
	OMICS_IM102_691_1d_Protein_2_009_Run1_16Jan15_Falcon_14-10-15_msgfplus.mzid.gz	Mzid
	OMICS_IM102_691_1d_Protein_2_009_Run1_16Jan15_Falcon_14-10-15_msgfplus.pride.mztab.gz	Mztab

Items per page:

1 - 5 of 399

Similar Datasets

NHBE proteome response to a wild type infectious clone of H1N1 Influenza virus

Project description:Proteomic data from mouse lung; Treated with wild-type and mutant H7N9 and mockulum; Time points 1, 2, 4 & 7 days; 5 biological replicates

2017-05-24 | PXD006265 | Pride

Multifunctional Activity-Based Protein Profiling of the Developing Lung

Project description:Data includes proteomics analysis of P450-ABP (2EN, ATW8, ATW12), FP-2, and ATP-ABP labeled mouse lung lysate S9. Lungs from the following developmental stages were used in the study: gestational day 17, post natal days 0, 21, and 42. Also included are global analyses of the same mice lungs.

2018-10-22 | PXD008836 | Pride

Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung

Project description:Lipidomics, proteomics and metabolomics characterization of the ontogeny of lipid, protein and metabolite changes during normal postnatal lung development

2018-10-22 | PXD004651 | Pride

Mouse lung metabolome response to a wild type infectious clone of H7N9 Influenza virus and mutants

Project description:Metabolomics data from mouse lung; Treated with wild-type and mutant H7N9 and mockulum; Time points 1, 2, 4 & 7 days; 5 biological replicates

2015-07-31 | MSV000079206 | MassIVE

Mouse lung proteome response to a wild type infectious clone of H7N9 Influenza virus and mutants

Project description:Proteomic data from mouse lung; Treated with wild-type and mutant H7N9 and mockulum; Time points 1, 2, 4 & 7 days; 5 biological replicates

2015-10-02 | MSV000079343 | MassIVE

Mouse lung lipidomics response to a wild type infectious clone of H7N9 Influenza virus and mutants

Project description:Lipidomics data from mouse lung; Treated with wild-type and mutant H7N9 and mockulum; Time points 1, 2, 4 & 7 days; 5 biological replicates

2022-07-01 | MSV000089784 | MassIVE

Gut Microbial Ecosystem Multiomics in Inflammatory Bowel Disease

Project description:Using multiple omics approaches to explore the effect of the gut microbial ecosytem on inflammatory bowel disease

2019-04-05 | PXD008675 | Pride

Host targets of Citrobacter secreted effectors

Project description:Identification of human proteins targeted by Citrobacter secreted effectors by affinity purification followed by mass spectrometry.

2016-06-22 | PXD003943 | Pride

Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane (revised)

Project description:Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites.

2019-08-27 | PXD012494 | Pride

Chemical profiling of live cell temporal redox dynamics in a photoautotrophic cyanobacterium

Project description:We have developed a quantitative chemical probe approach for live cell labeling of proteins that are sensitive to redox modifications. We utilize this in vivo strategy coupled to mass spectrometry-based proteomics to identify 176 proteins undergoing ~5-10 fold dynamic redox change in response to nutrient limitation and subsequent replenishment in the photoautotrophic cyanobacterium, Synechococcus sp. PCC 7002. This method enables the identification of redox changes in as little as 30 seconds after nutrient perturbation, and oscillations in reduction and oxidation for 60 minutes following the perturbation. The redox changes were validated by demonstrating that protein abundances did not change per global proteomic analyses. Peptides identified by MS for global and probe-labeled samples were required to be at least six amino acids in length having a mass spectra generating function score of <=1E-10, which corresponds to an FDR of <1%. Additionally, only peptides unique in identifying a single protein were utilized to estimate protein abundances, and proteins represented by <2 unique peptides were removed. This resulted in the identification of 176 redox probe labeled protein identifications, and 808 protein identifications in the global data.

2015-08-24 | PXD000329 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data