Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAseq of yeast cells sampled during the lag (10% glucose consumption), mid-exponential (75% glucose consumed) and post-exponential phases (>99% glucose consumed)

ABSTRACT: RNAseq of yeast cells sampled during the lag (10% glucose consumption), mid-exponential (75% glucose consumed) and post-exponential phases (>99% glucose consumed)

PROVIDER: PRJEB31173 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3148800.fastq.gz	Fastqsanger.gz
	ERR3148810.fastq.gz	Fastqsanger.gz
	ERR3148820.fastq.gz	Fastqsanger.gz
	ERR3148830.fastq.gz	Fastqsanger.gz
	ERR3148840.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Transcriptomic profiling of Salmonella during lag, exponential and stationary phases of growth

Project description:Transcriptional profiles during all phases of growth of Salmonella Typhimurium SL1344 were obtained and used to investigate growth phase-dependent alterations in gene expression. Viable count growth curve analysis of the growth system showed a culture lag time of 2.09 hours, and profiles at 4, 20, 40, 60, 90 and 120 minutes were measured accordingly. For comparison, profiles of the inoculum (0 min), mid-exponential (380 min), late-exponential (630 min), early-stationary (900 min) and late-stationary phase (2880 min) were also obtained. Large-scale gene-expression changes were seen, with substantial changes within 4 minutes of inoculation, indicating the speed and sophistication at which Salmonella senses its new environment during lag phase.

2011-12-13 | GSE22294 | GEO

RNAseq of yeast cells sampled during the lag (10% glucose consumption), mid-exponential (75% glucose consumed) and post-exponential phases (>99% glucose consumed)

Project description:The aim of the study was to identify regulatory elements of promoters associated with glucose-dependent gene expression profiles. For the transcriptome analysis an overnight culture of log-phase S. cerevisiae CEN.PK-113-7D grown in Delft medium was inoculated into a 500mL Delft medium at a starting OD of 0.03We carried out biological triplicate sampling from a 1 ltr BioStat Q bioreactor at 30 degrees with 800rpm agitation, with controlled aeration and pH maintained at 6 using 2M NaOH.

2019-04-01 | E-MTAB-7657 | biostudies-arrayexpress

Transcription profiling by array of Clostridium acetobutylicum on glucose and xylose substrates under exponential, continuous and diauxie growth.

Project description:Clostridium acetobutylicum was grown in a batch-culture with minimal medium containing glucose and xylose as substrate. Diauxie growth was observed after glucose was consumed. Following the organism grows on xylose. Transcriptional analysis was done to pursue the cellular processes during the switch from growth on glucose to growth on xylose. We compared DNA-Microarray data from cells grown during the exponential phase on glucose (A), with cells growing during the start of diauxie growth lag (B), during the end of diauxie growth lag (C) and during exponential growth on xylose (D). We used cells grown in a continuous culture with glucose as substrate as common reference for the samples A-D.

2010-09-30 | E-MEXP-2613 | biostudies-arrayexpress

Transcriptomic profiling of Salmonella during lag, exponential and stationary phases of growth

2011-12-13 | E-GEOD-22294 | biostudies-arrayexpress

E-MTAB-7657

Project description:RNAseq of yeast cells sampled during the lag (10% glucose consumption), mid-exponential (75% glucose consumed) and post-exponential phases (>99% glucose consumed)

2019-09-09 | E-MTAB-7657 | ExpressionAtlas

Defining the impact of exoribonucleases in the shift between exponential and stationary phases

Project description:The transition between exponential and stationary phase is a natural phenomenon for all bacteria and requires a massive readjustment of the bacterial transcriptome. Exoribonucleases are key enzymes in the transition between the two growth phases. PNPase, RNase R and RNase II are the major degradative exoribonucleases in Escherichia coli. We analysed the whole transcriptome of exponential and stationary phases from the WT and mutants lacking these exoribonucleases (Δpnp, Δrnr, Δrnb, and ΔrnbΔrnr). When comparing the cells from exponential phase with the cells from stationary phase more than 1000 transcripts were differentially expressed, but only 491 core transcripts were common to all strains. There were some differences in the number and transcripts affected depending on the strain, suggesting that exoribonucleases influence the transition between these two growth phases differently. Interestingly, we found that the double mutant RNase II/RNase R is similar to the RNase R single mutant in exponential phase while in stationary phase it seems to be closer to the RNase II single mutant. This is the first global transcriptomic work comparing the roles of exoribonucleases in the transition between exponential and stationary phase.

2019-11-13 | GSE117635 | GEO

RNA-seq of wild-type cells, single and double mutants of GCN5 and HDA1 grown at exponential and early post-diauxic shift phases

Project description:To determine the roles of histone acetyltransferase Gcn5 and histone deacetylase Hda1 in regulating metabolic reprogramming during glucose starvation in Saccharomyces cerevisiae cells. The transcriptome of wild-type, gcn5Δ, hda1Δ, and gcn5Δhda1Δ cells grown at both glucose-replete (exponential phase) and glucose-starved (early PDS (post-diauxic shift) phase) conditions were determined.

2023-06-01 | E-MTAB-11046 | biostudies-arrayexpress

Proteomic profiling of the exponential and stationary of phases of CHO cell culture.

Project description:A non-mAb producing CHO-K1GS cell line was cultured for 7 days, samples were acquired for proteomics at 96 h post-seeding when the cells were in exponential growth (n = 4) and at 168 h when the cells had entered stationary phase (n = 4).

2024-08-10 | PXD053511 | Pride

Transcription profiling of Legionella longbeachae in exponential and postexponential phases

Project description:To know the expression pattern in exponential and postexponential phases of Legionella longbeachae growth curve

2010-02-25 | E-MTAB-199 | biostudies-arrayexpress

Small RNA sequencing of Pyrobaculum species in exponential and stationary phases

Project description:Small RNA sequencing of Pyrobaculum species in exponential and stationary phases

| PRJNA415954 | ENA