Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryzias latipes

ABSTRACT: Small freshwater fish native to eastern Asia

PROVIDER: PRJNA16701 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	Kiyosu_wild_trios_phased_SNPs_chr_only.vcf.gz	Vcf
	Kiyosu_wild_trios_phased_SNPs_chr_only.vcf.gz.tbi	Vcf
	Hni_Hsok_Kaga_Nilan_SNPs_chr_only.vcf.gz	Vcf
	Hni_Hsok_Kaga_Nilan_SNPs_chr_only.vcf.gz.tbi	Vcf

Items per page:

1 - 5 of 4074

Similar Datasets

Transcriptomic profiles of Japanese medaka (Oryzias latipes) in response to alkalinity stress

Project description:Alkalinity stress is considered to be one of the major stressors for fish in saline-alkali water. Thus, it is of great significance from both aquaculture and physiological viewpoint to understand the molecular genetic response of aquatic organisms to alkalinity stress. The objective of this study is to determine genome-wide gene expression profiles to better understand the physiology response of medaka (Oryzias latipes) to high carbonate alkalinity stress. In lab-based cultures, adult fish were exposed to freshwater and high carbonate alkalinity water .We designed a microarray containing 26429 oligonucleotides and describe our experimental results for measuring gene expression changes in the gill of carbonate alkalinity stress exposed fish. The fish were exposed to freshwater (FW) and high carbonate alkalinity water (AW) for 96h, each with three replicates.

2014-01-24 | E-GEOD-27298 | biostudies-arrayexpress

Transcriptomic profiles of Japanese medaka (Oryzias latipes) in response to alkalinity stress

2014-01-24 | GSE27298 | GEO

Oryzias latipes

Project description:UPA-Seq using brain of medaka fish

| PRJDB7434 | ENA

Oryzias latipes

Project description:Seasonal changes of gene expression of eyes in Medaka fish (Oryzias latipes)

| PRJNA369208 | ENA

Genome-wide gene expression Oryzias latipes under antibiotics (ampicillin and erythromycin)

Project description:The goals of this study are to compare NGS-derived transcriptome profiling (RNA-seq) of Oryzias latifes (Korea native ricefish) upon treatment of mock, ampicillin and erythromycin

2022-06-10 | GSE205468 | GEO

Oryzias latipes

Project description:Transcriptome analysis of the kidney and intestine isolated from freshwater- and seawater-aclimated Japanese Medaka.

| PRJDB10996 | ENA

Seasonal changes of gene expression of eyes in Medaka fish (Oryzias latipes)

Project description:To examine the seasonal adaptation, we compared the gene expression of eyes between SL (short-day and low-temperature conditions: 10 h light/14 h dark and 8 °C) and LD (long-day and warm-temperature conditions: 14 h light/10 h dark and 26 °C) conditions in Medaka fish (Oryzias latipes).

2017-09-01 | GSE94258 | GEO

Oryzias latipes strain:Cab

Project description:Transcriptome analysis of Oryzias latipes adult fish

| PRJDB14195 | ENA

Acute mortality in laboratory medaka (Oryzias latipes).

Project description: Not available

| S-EPMC10911073 | biostudies-literature

Immunoglobulin heavy chains in medaka (Oryzias latipes).

Project description:BackgroundBony fish present an immunological system, which evolved independently from those of animals that migrated to land 400 million years ago. The publication of whole genome sequences and the availability of several cDNA libraries for medaka (Oryzias latipes) permitted us to perform a thorough analysis of immunoglobulin heavy chains present in this teleost.ResultsWe identified IgM and IgD coding ESTs, mainly in spleen, kidney and gills using published cDNA libraries but we did not find any sequence that coded for IgT or other heavy chain isotypes described in fish. The IgM - ESTs corresponded with the secreted and membrane forms and surprisingly, the latter form only presented two constant heavy chain domains. This is the first time that this short form of membrane IgM is described in a teleost. It is different from that identified in Notothenioid teleost because it does not present the typical splicing pattern of membrane IgM. The identified IgD-ESTs only present membrane transcripts, with Cμ1 and five Cδ exons. Furthermore, there are ESTs with sequences that do not have any VH which disrupt open reading frames. A scan of the medaka genome using transcripts and genomic short reads resulted in five zones within a region on chromosome 8 with Cμ and Cδ exons. Some of these exons do not form part of antibodies and were at times interspersed, suggesting a recombination process between zones. An analysis of the ESTs confirmed that no antibodies are expressed from zone 3.ConclusionsOur results suggest that the IGH locus duplication is very common among teleosts, wherein the existence of a recombination process explains the sequence homology between them.

| S-EPMC3141427 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data