Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification differentially expressed genes in the mouse testis caused by Prss54 deficiency

ABSTRACT: Identification differentially expressed genes in the mouse testis caused by Prss54 deficiency

PROVIDER: PRJNA438076 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Identification differentially expressed genes in the mouse testis caused by Prss55 deficiency

Project description:Identification differentially expressed genes in the mouse testis caused by Prss55 deficiency

| PRJNA419885 | ENA

Identification differentially expressed genes in the mouse testis caused by Prss37 deficiency

Project description:Identification differentially expressed genes in the mouse testis caused by Prss37 deficiency

| PRJNA758806 | ENA

Identification differentially expressed genes in the mouse testis caused by Prss37 deficiency

Project description:Testes from three wt and three Prss37-/- mice were used for gene expression analysis using whole mouse genome 4 × 44 k microarray (Agilent Technologies). A total of 31 genes were identified to be differentially expressed significantly (p < 0.05, fc ≥ 2). Fold changes of ten genes (seven up-regulated genes and three down-regulated genes) were examined by qRT-PCR for data validation.

2021-09-02 | GSE183009 | GEO

Identification differentially expressed genes in the mouse testis caused by Prss55 deficiency

Project description:Testes from three wt and three Prss55-/- mice were used for gene expression analysis using whole mouse genome 4 × 44 k microarray (Agilent Technologies). A total of 72 genes were identified to be differentially expressed significantly (p < 0.05, fc ≥ 2). Fold changes of ten genes (seven up-regulated genes and three down-regulated genes) were examined by qRT-PCR for data validation.

2017-11-28 | GSE107350 | GEO

Analysis of genes differentially expressed between rete testis cells and Sertoli cells of the mouse testis

Project description:Analysis of genes differentially expressed between rete testis cells and Sertoli cells of the mouse testis

| PRJNA1013460 | ENA

Identification of Differentially Expressed Genes in Human Testis Biopsies with Defective Spermatogenesis

Project description:Identification of Differentially Expressed Genes in Human Testis Biopsies with Defective Spermatogenesis

| PRJNA933130 | ENA

Differentially expressed proteins between WT testis and Cfap70-KO testis

Project description:We applied iTRAQ Quantification Proteomics to explore Differentially expressed proteins between WT testis and Cfap70-KO testis. In this iTRAQ quantification project,there were 6 Mus_musculus samples named C_1, C_2, C_3, K_1, K_2, K_3 and we did 1 technical duplicate experiments. Totally 480850 spectrums were generated, 38748 peptides and 6734 proteins were identified with 1% FDR. proteins with 1.2 fold change(mean value of all comparison groups) and P-value(t-test of all comparision groups) less than 0.05 were defined as differentially expressed proteins.

2022-04-11 | PXD033133 |

Identification of Differentially Expressed Genes in Human Testis Biopsies with Defective Spermatogenesis

Project description:The study was designed to identify differences in the expressed transcriptome of the two pathological human testis sample groups compared to normal spermatogenesis samples, with the objective of discovering genes related to the pathological condition. Transcriptional differences in human testis biopsies collected from men with normal spermatogenesis (NSP, n=3; intact germ cells, clinical score - 10), spermatid arrest (SDA, n=2; contains somatic cells and germ cells up to round spermatids, clinical score – 4-5) and Sertoli cell-only (SCO, n=2; complete absence of germ cells, clinical score - 0) phenotypes were assessed by RNA sequencing. A total of over 49 million reads were generated in NSP samples, over 24 million reads in SDA samples, and over 13 million reads in SCO samples. Differentially expressed genes (DEG) were identified based on a mean minimum count => 5, FDR <= 0.05 and log2FC fold change of >0.585 or <-0.585. Genes differentially expressed in pathological groups SDA and SCO compared to NSP, and genes differentially expressed in between the two pathological groups SDA and SCO were filtered. The study discovered a number of significantly differentially expressed genes (DEG) between groups as follows: NSP vs SDA n=1,873; SDA vs SCO n= 4,017; and NSP vs SCO n=10,253. A number of genes (n=10) were selected for further analysis by qRT-PCR and the detection of the protein (n=2) localization in testis by immunohistochemistry.

2024-12-05 | GSE224929 | GEO

Analysis of genes differentially expressed between rete testis cells and Sertoli cells of the mouse testis

Project description:The rete testis (RT) is a region of the mammalian testis which plays an important role in testicular physiology. The RT epithelium consists of cells sharing some well-known gene markers with supporting Sertoli cells (SCs). However, little is known about the differences in gene expression between these two cell populations. Here, we used fluorescence-activated cell sorting (FACS) to obtain pure cultures of neonatal RT cells and SCs and identified differentially expressed genes (DEGs) between these cell types using RNA sequencing (RNA-seq).

2023-12-06 | GSE242442 | GEO

Identification differentially expressed genes in the mouse testis caused by Prss54 deficiency

Project description:To further investigate molecular mechanism of Prss54 in mouse, we have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential role to be downstream targets of Prss54.

2018-03-14 | GSE111758 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data