Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sequencing and analysis of BL21 prokaryotic transcriptome

PROVIDER: PRJNA544782 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9126592_1.fastq.gz	Fastqsanger.gz
	SRR9126592_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Time series of Escherichia coli BL21(DE3) after temperature upshift from 37°C to 42°C, tiling arrays

Project description:Heat-responsive and time-resolved changes in transcriptome of E. coli BL21(DE3) Experimentally mapped transcriptome structure of Escherichia coli BL21(DE3) by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 10 nt).

2020-04-12 | GSE148034 | GEO

Expression data from Escherichia coli

2006-07-07 | GSE5239 | GEO

Arabidopsis thaliana ecotype Columbia [Col-0]: incubated with E. coli vs. Control

Project description:To explore mechanisms involved in the plant-microbe interactions, we proceeded with genome-wide transcriptome analysis of Arabidopsis roots incubated with E. coli Bl21 for 24 hours. Control plants did not receive E. coli.

2010-12-01 | GSE22277 | GEO

Strain-dependent Genetic Heterogeneity Shapes Long-term Stability of Bioproduction in E. coli

Project description:Deep-sequencing of the engineered production genes in five E coli production chassis strains (BL21(DE3), MG1655, TOP10, W and W3110) producing two case metabolic products, 2,3-butanediol and mevalonic acid

2020-11-17 | E-MTAB-9800 | biostudies-arrayexpress

DNA-seq of E. coli BL21 (DE3) Evolved in High pH (pH = 9) Terrific Broth Media

Project description:Whole genome sequencing was performed on E. coli BL21 (DE3) evolved at 25°C in pH 9 terrific broth media buffered with Tris-HCl (pH 9). The evolved E. coli was characterized and compared to the parent strain.

2023-10-31 | E-MTAB-12334 | biostudies-arrayexpress

Transcription profiling of E. coli BL21, BL21/pOri1 and BL21/pOri2mutants

Project description:Transcription profiles in BL21, BL21/pOri1 and BL21/pOri2 were analysed using DNA microarray technology. BL21, BL21/pOri1 or BL21/pOri2 strains were cultured at chemostat status and harvested after the cultivation arrived steady status. Experiment Overall Design: BL21, BL21/pOri1 and BL21/pOri2 were cultured at the exponential growth status or at the same growth rate status, respectively. E. coli BL21, BL21/pOri1 and BL21/pOri2 RNAs were reverse-transcripted into cDNAs, The RNAs from the BL21, BL21/pOri1, BL21/pOri2 were labelled with biotin. The labelled cDNAs were mixed and then hybridized on the microarray slides. Experiments were repeated four times. Most of them have no significant difference comparing plasmid-carrying E. coli and plasmid-free E. coli

2008-06-13 | E-GEOD-5239 | biostudies-arrayexpress

Project description:Prokaryotic transcriptome analysis

| PRJNA1089393 | ENA

E.coli BL21 vs HLT013

Project description:Transcriptional profiling of E. coli strain comparing control BL21 with recombineered HLT013. HLT013 strains was derived from BL21 and capable of producing thymidine.

2015-06-18 | GSE69963 | GEO

Time series of Escherichia coli BL21(DE3) growth curve, tiling arrays

Project description:Experimentally mapped transcriptome structure of Escherichia coli BL21(DE3) by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 10 nt).

2017-01-13 | GSE93565 | GEO

Project description:Analysis of bacterial prokaryotic transcriptome sequencing

| PRJNA1252877 | ENA