Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide chromatin binding of ARNTL2 in nasopharyngeal carcinoma cell line HONE1 [CHIP-seq]

ABSTRACT: Genome-wide chromatin binding of ARNTL2 in nasopharyngeal carcinoma cell line HONE1 [CHIP-seq]

PROVIDER: PRJNA981448 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24874619_1.fastq.gz	Fastqsanger.gz
	SRR24874619_2.fastq.gz	Fastqsanger.gz
	SRR24874620_1.fastq.gz	Fastqsanger.gz
	SRR24874620_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Nasopharyngeal carcinoma cell lines (expression analysis)

Project description:Three nasopharyngeal carcinoma cell lines (CNE1, CNE2, and HONE1) expression patterns against an immortalized nasopharyngeal epithelial cell line NP69.

2009-03-05 | GSE15047 | GEO

Genome-wide chromatin binding of ARNTL2 in nasopharyngeal carcinoma cell line HONE1 [CHIP-seq]

Project description:Abnormal expression of circadian genes is known to be engage in tumor initiation and progression through disrupting rhythms of cellular processes. Here, we determined a significant role of the core circadian transcription factor ARNTL2 in nasopharyngeal carcinoma metastasis. To further investigate the downstream targets of ARNTL2 in nasopharyngeal carcinoma, chromatin immunoprecipitation (ChIP) sequencing was performed in ARNTL2-overexpression HONE1 cell.

2024-07-10 | GSE234441 | GEO

SHROOM2 gene knockdown effect on nasopharyngeal carcinoma cell

Project description:Analysis of nasopharyngeal carcinoma cell line HONE1 following knockdown of SHROOM2 gene We used microarrays to detail the global gene expression in tissues from HONE1 cells with or without SHROOM2 knockdown.

2019-02-05 | GSE119020 | GEO

Nasopharyngeal carcinoma cell lines (expression analysis)

Project description:Three nasopharyngeal carcinoma cell lines (CNE1, CNE2, and HONE1) expression patterns against an immortalized nasopharyngeal epithelial cell line NP69. This study was done to screen genes consensually overexpressed in NPC. NP69 was used as normal control. The microarray analyses were done in a same batch.

2009-03-05 | E-GEOD-15047 | biostudies-arrayexpress

mRNA expression profiling of nasopharyngeal carcinoma cell line HONE1 upon ARNTL2 knockdown [RNA-seq]

Project description:Abnormal expression of circadian genes is known to be engage in tumor initiation and progression through disrupting rhythms of cellular processes. Here, we determined a significant role of the core circadian gene ARNTL2 in nasopharyngeal carcinoma metastasis. To further investigate the underlying mechanism of ARNTL2 in nasopharyngeal carcinoma, High-throughput RNA sequencing was performed in ARNTL2-knockdown HONE1 cell.

2024-07-10 | GSE234440 | GEO

Villin like suppresses nasopharyngeal carcinoma proliferation by downregulating MYC

Project description:The initial manifestations of nasopharyngeal carcinoma (NPC) are subtle and imperceptible, leading to unfavorable clinical outcomes and limited therapeutic alternatives among Southeast Asian populations. In this study, we examined the potential effects of VILL on nasopharyngeal carcinoma cells. We investigated the mRNA expression levels of VILL in HONE1 EBV cells overexpressing VILL compared to control cells. Data were analyzed to identify differential gene expression between VILL-transfected and non-transfected HONE1 EBV cells.

2025-12-03 | GSE305912 | GEO

microRNA profiles of exosomes from two nasopharyngeal carcinoma cell line and nasopharyngeal epithelial cells

Project description:microRNA profiles of exosomes :Exosomes from two nasopharyngeal carcinoma cell line TW03M-oM-<M-^HEBV+M-oM-<M-^Iand TW03M-oM-<M-^HEBV-M-oM-<M-^I and Exosomes from nasopharyngeal epithelial cells NP69 Two-condition experiment, Exosomes from two nasopharyngeal carcinoma cell line vs.one normal epithelium cell line. Biological replicates:1 Exosomes from nasopharyngeal carcinoma cell line TW03M-oM-<M-^HEBV+M-oM-<M-^I, 1 Exosomes from nasopharyngeal carcinoma cell line TW03M-oM-<M-^HEBV-M-oM-<M-^I,1 Exosomes from nasopharyngeal epithelial cells NP69.

2014-05-07 | E-GEOD-57367 | biostudies-arrayexpress

Nasopharyngeal carcinoma cell lines (copy number analysis)

Project description:Five NPC cell lines (HONE1, CNE1, CNE2, 5-8F, and 6-10B) and an immortalized nasopharyngeal epithelial cell line NP69 were evaluated with 250K SNP arrays (Affymetrix) to detect the genome-wide DNA copy number alterations.

2009-03-05 | GSE15051 | GEO

Expression profiling of nasopharyngeal carcinoma cell lines

Project description:To identify the deregulated genes which may involved in the carcinogenesis of nasopharyngeal carcinoma (NPC). To identify potential tumor suppressor genes / oncogenes of NPC, we have employed whole genome microarray expression profiling as a discovery platform to analyze two NPC cell lines, TW01 and HONE1. For the purpose to filter out differential genes may not related to carcinogenesis of NPC, a gene expression database for premalignant nasopharyngeal epithelial cells was obtained from NP460hTert cells, and we used the commercial universal human RNA (stratagene) as common reference for all microarray experiments. A total of 1272 genes were commonly up-regulated (fold change > 2) and 1810 genes were commonly down-regulated (fold change < 0.5) in TW01 and HONE1 cell lines, whereas not deregulated in NP460hTert cells.

2010-03-09 | GSE15170 | GEO

microRNA profiles of exosomes from two nasopharyngeal carcinoma cell line and nasopharyngeal epithelial cells

Project description:microRNA profiles of exosomes :Exosomes from two nasopharyngeal carcinoma cell line TW03（EBV+）and TW03（EBV-） and Exosomes from nasopharyngeal epithelial cells NP69

2014-05-07 | GSE57367 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data