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MetabolomicsEnergy-translation coupling limits yeast anaerobic growth

This study employs yeast as a model system to thoroughly investigate the differences in regulatory mechanisms under various nutrient limitation conditions, utilizing a systems biology approach integrated with techniques such as multi-omics analysis.To obtain a comprehensive quantitative landscap...

2026-05-24 | MTBLS14573 | MetaboLights
MetabolomicsMolecular basis for multidrug efflux by an anaerobic-associated RND transporter

Bacteria can resist antibiotics and toxic substances within demanding ecological settings, such as low oxygen, extreme acid, and during nutrient starvation. MdtEF, a proton motive force-driven efflux pump from the resistance-nodulation-cell division (RND) superfamily, is upregulated in these cond...

2025-09-26 | MTBLS13050 | MetaboLights
ProteomicsProteomic Stable Isotope Probing of Cecal Microbiota Using U ¹³C Glucose Under Anaerobic Conditions
This study applies proteomic stable isotope probing (proteomic SIP) to profile microbial protein synthesis during anaerobic incubation with 100% U ¹³C glucose. Cecal microbiota were cultured in deoxygenated M9 medium supplemented with 0.3 g L⁻¹ sodium thioglycolate, with U ¹³C glucose. Following inc...
ORGANISM(S): gut metagenome 
2026-09-12 | PXD075725 | Pride
Proteomic sip  u ¹³c glucose  ¹³c labeling  anaerobic incubation  m9 medium  mouse cecal microbiota  metaproteomics  nanolc  orbitrap fusion  dda  fasp  sipros 5  mgnify microbiome database 
TranscriptomicsDefinition of the Pseudomonas aeruginosa Anr and Dnr Regulons
The anaerobic metabolism of the opportunistic pathogen Pseudomonas aeruginosa is important for growth and survival during persistent infections. The two Fnr-type transcription factors Anr and Dnr regulate different parts of the underlying network. Both are proposed to bind to a non-distinguishable D...
ORGANISM(S): Pseudomonas aeruginosa 
2010-07-07 | E-GEOD-17179 | biostudies-arrayexpress
Genomicsincubation soil metagenome
Anaerobic incubation of soil after addition of different types of organic fertilizers
PRJNA1013701 | ENA
Genomicsanaerobic sludge
anaerobic sludge Metagenome
PRJNA1328970 | ENA
TranscriptomicsQuantitative Different Analysis of antimicrobial peptide LL37 expressed in E.coli Top 10 under aerobic and anaerobic condition.
We reported the transcriptional profiles of E.coli expressing antimicrobial peptide LL37 under stress response condition. 4 samples, two groups, one group is under aerobic condition, the other group is under anaerobic condition. One of samples is E.coli which expressed LL37 as induction in each gro...
ORGANISM(S): Escherichia coli 
2013-08-21 | E-GEOD-43408 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Escherichia coli O157:H7 EDL933 during anaerobic growth using microarrays
The transcriptome of Escherichia coli K-12 has been widely studied over a variety of conditions for the past decade while such studies involving E. coli O157:H7, its pathogenic cousin, are just now being conducted. To better understand the impact of an anaerobic environment on E. coli O157:H7, globa...
ORGANISM(S): Escherichia coli 
2010-12-01 | E-GEOD-13301 | biostudies-arrayexpress
TranscriptomicsElectron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil contaminated aquifer by Pyro-SIP
Bioavailability of electron acceptors is probably the most limiting factor in the restoration of anoxic, contaminated environments. The oxidation of contaminants such as aromatic hydrocarbons, particularly in aquifers, often depends on the reduction of ferric iron or sulphate. We have previously det...
ORGANISM(S): unidentified 
2011-03-18 | E-GEOD-25449 | biostudies-arrayexpress
ProteomicsTime-resolved metaproteomic profiling of mouse cecum microbiome incubations under 12C and 13C-inulin conditions
This dataset contains label-free LC-MS/MS measurements of mouse cecum microbiome incubation samples collected from 1-year-old mice and analyzed across a time course under control and 13C-inulin treatment conditions. Samples were collected at 0, 4, 8, 12, 16, 20, and 24 hours with three biological re...
ORGANISM(S): gut metagenome 
2026-09-13 | PXD076077 | Pride
Control Gut microbiome Stable isotope probing Label-free proteomics Mouse cecum microbiome Time course 13c-inulin Dda Metaproteomics Orbitrap fusion 
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