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ProteomicsTime-resolved metaproteomic profiling of mouse cecum microbiome incubations under 12C and 13C-inulin conditions
This dataset contains label-free LC-MS/MS measurements of mouse cecum microbiome incubation samples collected from 1-year-old mice and analyzed across a time course under control and 13C-inulin treatment conditions. Samples were collected at 0, 4, 8, 12, 16, 20, and 24 hours with three biological re...
ORGANISM(S): gut metagenome 
2026-09-13 | PXD076077 | Pride
Control Gut microbiome Stable isotope probing Label-free proteomics Mouse cecum microbiome Time course 13c-inulin Dda Metaproteomics Orbitrap fusion 
UnknownWheat Bran Does Not Affect Postprandial Plasma Short-Chain Fatty Acids from 13C-inulin Fermentation in Healthy Subjects.
Not available
S-EPMC5295127 | biostudies-literature
ProteomicsMetaproteomic analysis of cecal contents from healthy mice versus mice with DSS-induced colitis
The gut microbiota influences host epigenetics by fermenting dietary fiber into butyrate. Although butyrate could promote histone acetylation by inhibiting histone deacetylases, it may also undergo oxidation to acetyl-CoA, a necessary cofactor for histone acetyltransferases. Here, we find that epi...
ORGANISM(S): Mus musculus (Mouse) 
2022-12-11 | PXD026959 | Pride
Dss Inulin Microbiota Cecal contents Colitis Metaproteomics 
UnknownUntargeted Stable Isotope Probing of the Gut Microbiota Metabolome Using 13C-Labeled Dietary Fibers.
Not available
S-EPMC8784920 | biostudies-literature
UnknownInfluence of Oxidation Degree on the Physicochemical Properties of Oxidized Inulin.
Not available
S-EPMC7284776 | biostudies-literature
ProteomicsUntargeted metabolomics and stable isotope tracing with U-13C-labeled fiber in healthy and colitic mice
By fermenting dietary fiber, the gut microbiota supplies carbon to host epithelial cells in the form of short-chain fatty acids and other metabolic byproducts. To track the transfer of carbon from fiber to host tissues via the microbiota and more clearly define the molecules mediating this transfer,...
ORGANISM(S): Microbiota (ncbitaxon:13613) Mus Musculus (ncbitaxon:10090) 
2021-07-04 | MSV000087752 | MassIVE
UnknownDietary Fibres Differentially Impact on the Production of Phenolic Acids from Rutin in an In Vitro Fermentation Model of the Human Gut Microbiota.
Not available
S-EPMC7352394 | biostudies-literature
UnknownUncovering <i>de novo</i> polyamine biosynthesis in the gut microbiome and its alteration in inflammatory bowel disease.
Not available
S-EPMC11812404 | biostudies-literature
Unknown13C-Stable isotope resolved metabolomics uncovers dynamic biochemical landscape of gut microbiome-host organ communications in mice.
Not available
S-EPMC11094917 | biostudies-literature
MetabolomicsAnalysis of metabolites in gut microbioal culture media and microbial cells
Not available
ORGANISM(S): Mus musculus 
ST001651 | MetabolomicsWorkbench
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