calcium-binding proteins

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Transcriptomics (2427)
Unknown (2209)
Genomics (661)
Proteomics (390)
Metabolomics (62)
Models (9)
Other (9)
Multiomics (2)

Organisms

Homo sapiens (1051)
Mus musculus (828)
Drosophila melanogaster (314)
Rattus norvegicus (108)
Saccharomyces cerevisiae (108)
Arabidopsis thaliana (77)
Caenorhabditis elegans (71)
Schizosaccharomyces pombe (35)
Escherichia coli (23)
Gallus gallus (23)
Danio rerio (20)
Escherichia coli str. K-12 substr. MG1655 (13)
Bos taurus (11)
Zea mays (9)
Canis lupus familiaris (9)
Sus scrofa (9)
Streptomyces venezuelae (8)
Salmonella enterica subsp. enterica serovar Typhimurium (8)
Tetrahymena thermophila (7)
Bacillus subtilis (7)
Candida albicans (7)
Pseudomonas aeruginosa (6)
Geobacter sulfurreducens PCA (5)
Carassius auratus (5)
Thermus thermophilus HB8 (5)
Solea senegalensis (5)
Corynebacterium glutamicum (5)
Xenopus laevis (4)
Cavia porcellus (1)
Mammalia (1)

Organisms

Mus musculus (25)
Homo sapiens (17)
Arabidopsis thaliana (5)
Rattus norvegicus (5)
Entamoeba histolytica (2)
Saccharomyces cerevisiae (2)
Gallus gallus (2)
Xenopus allofraseri (1)
Pimephales promelas (1)
Hordeum vulgare (1)
Ruditapes philippinarum (1)
Eragrostis tef (1)
Drosophila melanogaster (1)
Equus caballus (1)
Glycine max (1)
Danio rerio (1)
Toxoplasma gondii (1)
Oryza sativa Japonica Group (1)

Repository

biostudies-arrayexpress (2969)
MassIVE (148)
pride (124)
ENA (78)
MetaboLights (62)
geo (60)
jPOST (53)
iProX (33)
EGA (10)
PAXDB (7)
BioModels (6)
GPMDB (6)
PeptideAtlas (3)
Cell Collective (2)
PMR (1)

Tissue

Cell culture (28)
Epithelial cell (10)
Brain (7)
Heart (4)
Kidney (4)
Others (3)
Blood (3)
Cell suspension culture (3)
Macrophage (3)
Permanent cell line cell (3)
B cell (2)
Blood plasma (2)
Cerebrospinal fluid (2)
Early embryonic cell (2)
Erythrocyte (2)
Hepatocyte (2)
Osteoblast (2)
Pancreas (2)
Photosynthetic cell (2)
Plant cell (2)
Root (2)
Saliva (2)
Urine (2)
Whole body (2)
Adipose tissue (1)
Antenna (1)
Anther (1)
Blood cell (1)
C2C12 cell (1)
HeLa cell (1)

Disease

Normal (15)
Not Available (6)
Breast cancer (4)
Glioblastoma multiforme (3)
Colon cancer (3)
Disease free (3)
Colorectal cancer (2)
Chronic myeloid leukemia (2)
Alzheimer's disease (2)
Testicular seminoma (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
Osteosarcoma subtype fibroblastic (1)
Cocaine addiction (1)
Uninfected (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Immuno-osseus dysplasiaspondyloenchondrodysplasia (SPENCD) (1)
Cancer cell line pool (1)
Osteosarcoma (1)
Leukemia (1)
Coronary artery disease (1)
Mixoid liposarcoma (1)
Cancer (1)
Osteosarcoma (1)
Glioblastoma (1)
SINV infection (1)
Hepatocellular carcinoma (1)
Carcinoma (1)
Multiple myeloma (1)
Cervical cancer (1)

Technology Type

Mass Spectrometry (124)
Shotgun proteomics (51)
Mass spectrometry (39)
Affinity purification coupled with mass spectrometry proteomics (26)
Bottom-up proteomics (26)
Mass spectrometry assay (17)
Data-dependent acquisition (14)
Gel-based experiment (9)
SWATH MS (8)
NMR spectroscopy (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (3)
NMR spectroscopy assay (2)
Data-independent acquisition (2)
MSE (2)
Illumina HiSeq 2500 (1)
DiaPASEF (1)

Instrument Platform

NextSeq 500 (61)
Illumina NovaSeq 6000 (57)
Illumina HiSeq 2500 (45)
Illumina HiSeq 2000 (39)
Illumina HiSeq 4000 (36)
NextSeq 2000 (14)
NextSeq 550 (13)
Illumina MiSeq (12)
Illumina HiSeq 1500 (12)
Illumina Genome Analyzer II (11)
Illumina NovaSeq X (7)
Illumina Genome Analyzer IIx (6)
Illumina HiSeq 3000 (6)
Agilent High resolution C scanner (4)
Illumina HiSeq 1000 (3)
FastPrep‑24 homogenizer (MP Biomedicals) (2)
See manuscript (2)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (2)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (2)
Element AVITI (2)
PromethION (2)
Axon GenePix4000B (2)
Other (2)
418 [Affymetrix] (2)
Axon GenePix 4000B scanning hardware (2)
None (2)
Ion Torrent Proton (2)
N/A (2)
BGISEQ-500 (2)
Bravo automated liquid handling robot station (Agilent) (1)

Publication Date

2013 (457)
2010 (397)
2011 (358)
2015 (357)
2014 (288)
2012 (266)
2016 (193)
2008 (153)
2009 (124)
2025 (111)
2022 (95)
2024 (94)
2026 (88)
2007 (77)
2023 (71)
2020 (66)
2021 (64)
2019 (57)
2018 (46)
2017 (33)
2006 (26)
2005 (20)
2004 (7)
2003 (1)
2002 (1)

UNIPROT ID/AC

P10687 (2)
Q9JID2 (2)
10090.ENSMUSP00000072775 (2)
10090.ENSMUSP00000079944 (2)
10090.ENSMUSP00000105709 (2)
10090.ENSMUSP00000117461 (2)
10090.ENSMUSP00000127198 (2)
10090.ENSMUSP00000132065 (2)
10090.ENSMUSP00000132102 (2)
10090.ENSMUSP00000136357 (2)
10090.ENSMUSP00000136375 (2)
10090.ENSMUSP00000136544 (2)
10090.ENSMUSP00000137171 (2)
10090.ENSMUSP00000137236 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
3880.AES58538 (2)
3880.AES58539 (2)
3880.AES58546 (2)
3880.AES58557 (2)
3880.AES58564 (2)
3880.AES58577 (2)
3880.AES58580 (2)
3880.AES58587 (2)
3880.AES58595 (2)
3880.AES58596 (2)
3880.AES58598 (2)
Q92686 (1)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000247315 (1)

CHEBI ID

CHEBI:16919 (18)
CHEBI:16737 (15)
CHEBI:30769 (15)
CHEBI:17750 (14)
CHEBI:15891 (14)
CHEBI:17368 (14)
CHEBI:28300 (13)
CHEBI:17154 (13)
CHEBI:16704 (13)
CHEBI:18237 (12)
CHEBI:25017 (12)
CHEBI:15741 (12)
CHEBI:28044 (12)
CHEBI:16335 (12)
CHEBI:17822 (11)
CHEBI:15846 (11)
CHEBI:25094 (11)
CHEBI:17858 (11)
CHEBI:18257 (11)
CHEBI:16708 (11)
CHEBI:17268 (11)
CHEBI:15727 (11)
CHEBI:27266 (11)
CHEBI:16027 (11)
CHEBI:30915 (11)
CHEBI:27897 (11)
CHEBI:27732 (10)
CHEBI:26271 (10)
CHEBI:29108 (4)
CHEBI:16541 (1)

Metabolite Name

Creatine (19)
Adenosine (16)
Hypoxanthine (16)
Taurine (15)
Creatinine (15)
L-Tyrosine (15)
Adenine (14)
L-Phenylalanine (14)
Leucine (13)
Betaine (13)
Choline (13)
L-Tryptophan (13)
Inosine (13)
Histidine (12)
Uracil (12)
Ornithine (12)
L-Arginine (12)
Lysine (12)
Proline (12)
Uridine (12)
L-Alanine (11)
L-Threonine (11)
Phenylalanine (11)
Glutamine (11)
Uric acid (11)
Cytidine (11)
Xanthine (11)
Glycerophosphocholine (11)
L-Valine (11)
Cholesterol (10)

First Public Date

2014 (20)
2022 (10)
2023 (9)
2024 (8)
2025 (6)
2020 (5)
2026 (4)
2017 (4)
2021 (3)
2016 (3)
2019 (2)
2018 (2)
2015 (2)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

Chair of Parasite Molecular Biology Biological Chemistry and Drug Discovery, School of Life Sciences (3)
Department of Molecular and Translational Oncology, Maria Sklodowska-Curie Memorial Cancer Center and Institute of Oncology; Warsaw, Poland (2)
Medical Proteomics Unit, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (2)
School of Biological Sciences, Building 85, University of Southampton, Southampton, SO17 1BJ (2)
The University of Melbourne (2)
WWU Muenster, Institute of Plant Biology and Biotechnology (2)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
Amsterdam UMC, University of Amsterdam, Department of Medical Biochemistry, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands. (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Associate Professor of Systems Biology Department of Molecular Medicine University of Pavia 9, via A Ferrata/ 27100 Pavia / Italy (1)
Associate professor of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA 16802, USA (1)
Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing China (1)
Bioanalytical Research Labs, Department of Biosciences, University of Salzburg (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, the Netherlands. (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
CELL Unit & PICT Imaging Platform, de Duve Institute, UCLouvain, UCL B1.75.05, Avenue Hippocrate, 75, B-1200 Brussels, Belgium. Phone: +32-2-764.75.91; Fax: +32-2-764.75.43 (1)
Cancer Epidemiology Program, Division of Population Sciences, H. Lee Moffitt Cancer Center (1)
Cardiovascular Research Institute, Baylor College of Medicine, Houston, TX, USA (1)
Cell Biology of Bacterial Infections, IBMC, i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal (1)
Cell Biology, Department of Biology, Faculty of Science, Utrecht University, The Netherlands. (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3584 CG Utrecht, The Netherlands. (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3C584 CG Utrecht, The Netherlands (1)
Centre for MND Research, Department of Biomedical Sciences, Macquarie University, North Ryde, NSW, 2109 Australia (1)
Centre for Oral, Clinical and Translational Science, King's College London, London, United Kingdom (1)
Centre for Proteomic Research, Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB (1)
Centre scientifique de Monaco, Monaco (1)
College of Life sciences, Heilongjiang University/Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region, China (1)
College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, Hubei, PR China (1)
College of Veterinary Medicine, South China Agricultural University, Guangzhou, Guangdong Province 510642, PR China; (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)

IsPrivate

False (6)

Classification

protozoa (3)

Study type

Transcription profiling by array (1275)
ChIP-seq (545)
ChIP-chip by tiling array (390)
RNA-seq of coding RNA (271)
ChIP-chip by array (95)
Unknown experiment type (60)
Other (47)
RNA-seq of non coding RNA (38)
RNA-seq of coding RNA from single cells (23)
Comparative genomic hybridization by array (22)
Proteomic profiling by array (21)
Transcription profiling by SAGE (16)
Methylation profiling by high throughput sequencing (16)
Transcription profiling by tiling array (15)
Methylation profiling by array (14)
RNA-seq of total RNA (12)
Cell line - High-throughput sequencing (11)
CLIP-seq (9)
Hi-C (9)
DNA-seq (9)
CUT&RUN (9)
Transcription profiling by RT-PCR (8)
RIP-seq (8)
Animal - High-throughput sequencing (7)
High-throughput sequencing (6)
ATAC-seq (4)
Animal - One-color microarray (3)
Genotyping by array (3)
MNase-seq (2)
Human - High-throughput sequencing (2)

Release Date

2013 (546)
2010 (476)
2015 (448)
2011 (424)
2014 (375)
2012 (349)
2016 (274)
2021 (206)
2025 (205)
2022 (195)
2008 (195)
2009 (191)
2023 (180)
2020 (179)
2024 (171)
2019 (168)
2018 (139)
2017 (123)
2007 (107)
2026 (61)
2006 (49)
2005 (40)
2004 (20)
2003 (15)
2002 (12)
1999 (9)
2001 (7)
2000 (7)
1997 (3)
1998 (2)

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Gamma ray irradiation of epithelial carcinoma cells under hypoxic conditions

We demonstrate for the first time that under hypoxic conditions, A431 epithelial carcinoma cells exhibit increased viability when exposed to low-dose ?-irradiation, indicating that radiotherapy can promote tumor cell survival when oxygen supply is limited. When assessed using iTRAQ quantitative prot...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080784 | MassIVE

Association Study on the Regulation of Muscle Development-Related Genes, Proteins, and Metabolites in Different Parts by Gastrointestinal Flora During Various Developmental Stages of Liaoning Cashmere Goats

Introduction: Muscle growth and development in Liaoning cashmere goats (a dual-purpose breed for cashmere and meat) and its regulation by intestinal flora are key to improving meat production, yet relevant molecular mechanisms remain unclear.

Objectives: To reveal the molecular mechanism ...

2025-10-30 | MTBLS12972 | MetaboLights

S100 calcium-binding proteins A8/A9 initiate the early inflammatory program in injured peripheral nerve

To shed light on the early processes of immune response to peripheral nerve injury, we first used genome-wide transcriptional profiling and bioinformatics (Ingenuity, NextBio) pathway analyses of the proximal (P; regenerating) and distal (D; degenerating) nerve stumps at day 1 in the sciatic nerve a...

ORGANISM(S): Rattus norvegicus

2015-01-01 | E-GEOD-62282 | biostudies-arrayexpress

Design of Calcium-Binding Proteins to Sense Calcium.

Not available

S-EPMC7248937 | biostudies-literature

S100A6 Protein-Expression and Function in Norm and Pathology.

Not available

S-EPMC9866648 | biostudies-literature

Insight into Calcium-Binding Motifs of Intrinsically Disordered Proteins.

Not available

S-EPMC8391695 | biostudies-literature

The Effect of Single CpG Demethylation on the Pattern of DNA-Protein Binding.