cell-factory - OmicsDI

Show results for

Unknown (972)
Transcriptomics (150)
Genomics (98)
Proteomics (45)
Models (9)
Metabolomics (6)
Other (2)

Organisms

Homo sapiens (97)
Aerococcus urinae NBRC 15544 = CCUG 36881 (31)
Allexis (31)
Arabidopsis thaliana (16)
Mus musculus (16)
Saccharomyces cerevisiae (14)
Aspergillus niger (8)
Rattus norvegicus (3)
Dreissena polymorpha (2)
Aspergillus oryzae (2)
Thermothelomyces thermophilus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Coffea arabica (1)
Yarrowia lipolytica (1)
Corynebacterium glutamicum (1)
Populus tremula x Populus tremuloides (1)
Zea mays (1)
Oryza sativa (1)
Solanum lycopersicum (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
Mitragyna speciosa (1)
Rhodotorula toruloides (1)
Aspergillus fumigatus (1)
Aspergillus nidulans (1)
Schizosaccharomyces pombe (1)
Escherichia coli (1)
Pseudoalteromonas sp. A3 (1)
Tetragenococcus halophilus NBRC 12172 (1)
Rhodovulum sulfidophilum DSM 1374 (1)

Organisms

Homo sapiens (14)
unidentified (6)
Aspergillus niger (5)
Saccharomyces cerevisiae (4)
Thermothelomyces thermophilus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Trichoderma reesei (2)
Rhodotorula toruloides (2)
Zygosaccharomyces bailii ISA1307 (1)
Scheffersomyces stipitis CBS 6054 (1)
Arthrobacter sp. Helios (1)
Enterobacter sp. CGMCC 5087 (1)
Exiguobacterium sp. Helios (1)
Zymobacter palmae (1)
Vibrio sp. B1Z05 (1)
Sugiyamaella lignohabitans (1)
Talaromyces atroroseus (1)
Paenibacillus elgii (1)
Dunaliella salina (1)
Mitragyna speciosa (1)
Aspergillus nidulans (1)
Kluyveromyces marxianus (1)
Streptomyces collinus (1)
Dreissena polymorpha (1)
Aspergillus oryzae (1)
Pseudomonas putida KT2440 (1)
[Candida] boidinii (1)
Bacillus subtilis (1)
Escherichia coli (1)

Repository

biostudies-arrayexpress (138)
ENA (80)
pride (31)
geo (22)
EGA (11)
BioModels (9)
MassIVE (7)
MetaboLights (5)
iProX (4)
PanoramaPublic (2)
GNPS (1)
jPOST (1)

Tissue

Cell culture (7)
Epithelial cell (4)
Whole body (3)
Permanent cell line cell (2)
Blood cell (1)
Brain (1)
Fibroblast (1)
Lung (1)
Muscle cell (1)
Oocyte (1)
Protoplast (1)
Seedling (1)
Stem cell (1)

Disease

Lung cancer (2)
Tumour (1)
Adenocarcinoma (1)
Neurofibromatosis type 1 (1)
Brain cancer (1)
Malignant neoplasm of ovary (1)
Mitochondrial metabolism disease (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (12)
Bottom-up proteomics (9)
Data-independent acquisition (8)
Data-dependent acquisition (7)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (8)
Illumina HiSeq 1500 (7)
Illumina HiSeq 2000 (7)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
Q Exactive Plus (3)
Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Agilent 7890A GC coupled to a 5975C inert XL MSD (2)
LTQ Orbitrap (2)
IScan Illumina (1)
RiboZero (1)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (1)
DASGIP bioreactors (1)
Affymetrix Gene Atlas System (1)
Unix (1)
Racham server on Uppmax, NAISS (1)
FACS Aria-III (1)
Ion Torrent Proton (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2021 (24)
2013 (20)
2011 (19)
2016 (16)
2022 (14)
2025 (13)
2024 (13)
2015 (13)
2010 (13)
2014 (12)
2023 (10)
2012 (10)
2026 (9)
2018 (8)
2017 (6)
2019 (5)
2008 (4)
2020 (4)
2007 (2)
2005 (1)
2009 (1)

CHEBI ID

CHEBI:11424 (2)
CHEBI:17153 (2)
CHEBI:58675 (2)
CHEBI:74363 (2)
CHEBI:104873 (2)
CHEBI:138792 (2)
CHEBI:17120 (2)
CHEBI:53048 (2)
CHEBI:28718 (2)
CHEBI:53047 (2)
CHEBI:53046 (2)
CHEBI:21285 (2)
CHEBI:57774 (2)
CHEBI:58509 (2)
CHEBI:60820 (2)
CHEBI:28107 (2)
CHEBI:58756 (2)
CHEBI:16150 (2)
CHEBI:40673 (2)
CHEBI:32360 (2)
CHEBI:58201 (2)
CHEBI:17016 (2)
CHEBI:53042 (2)
CHEBI:58370 (2)
CHEBI:53045 (2)
CHEBI:58212 (2)
CHEBI:50606 (2)
CHEBI:57724 (2)
CHEBI:104362 (2)
CHEBI:104012 (2)

Metabolite Name

Xanthosine (3)
Cytidine (3)
Xanthine (3)
Uridine (3)
Haloperidol (2)
Nafcillin (2)
Istamycin FU-10 (2)
Solanidine (2)
Delphinidin (2)
Difloxacin (2)
Syringin (2)
Amoxicillin (2)
Sedoheptulose 7-phosphate (2)
N-Oleoylethanolamine (2)
N-Acetyl-D-glucosamine (2)
Prostaglandin G2 (2)
Sepiapterin (2)
Chlormadinone acetate (2)
Glutathione (2)
3-Methylindole (2)
L-Arginine (2)
12-Hydroxydodecanoic acid (2)
Citric acid (2)
Beclomethasone (2)
Nonadecanoic acid (2)
Pentadecanoic acid (2)
Myristoleic acid (2)
Guanine (2)
Suberic acid (2)
L-Glutamine (2)

First Public Date

2025 (11)
2014 (11)
2024 (10)
2018 (9)
2021 (7)
2026 (5)
2020 (5)
2016 (5)
2022 (4)
2019 (4)
2023 (3)
2017 (3)
2015 (3)

Modelling Approach

Constraint-based model (3)
Metabolic network (2)
Other (1)

Lab affiliation

GSK (3)
1Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Aalto University, Espoo, Finland (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
CECAD, University of Cologne (1)
Centro Nacional de Biotecnología (Macromolecular Structures (1)
College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University (1)
Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Integrative Medical Biology (IMB), Faculty of Medicine, Umeå University, 90187 Umeå, Sweden Section of Physiotherapy, Department of Community Medicine and Rehabilitation, Faculty of Medicine, Umeå University, 90187 Umeå, Sweden (1)
Department of Meiosis, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany. (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Neurology, Clinical Neuroscience Center, University Hospital and University of Zurich; Zurich, Switzerland (1)
Division of Blood Cells and Blood Cancer The Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville Victoria, Australia, 3050 (1)
EDyP (1)
Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria (1)
Institut für Mikrobiologie Universität Greifswald Felix Hausdorff Str.8 17489 Greifswald Tel.: (+49) 03834 420 5903 Fax.: (+49) 03834 420 5002 (1)
Institute of Plant and Food Science, Department of Biology, Southern University of Science and Technology; Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, Southern University of Science and Technology (1)
Lab head, WEHI, Melbourne, Australia (1)
Medizinisches Proteom-Center, Medical Faculty, Ruhr University Bochum, 44801 Bochum, Germany; 44801 Bochum, Germany (1)
Moffitt Cancer Center Tampa, FL, USA (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark (1)
Proteomics Technology Hub, IMP, Vienna, Austria (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)
Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), 1030 Vienna, Austria. (1)
Research Institute of Molecular Pathology (IMP), Vienna-Bio-Center (VBC), Vienna, Austria (1)
Univeristy of Massachusetts Medical School Department of Biochemistry and Molecular Pharmacology (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
University of Naples Federico II and CEINGE Biotecnoloige Avanzate "Franco Salvatore" (1)
University of Natural Resources and Life Sciences (BOKU), Muthgasse 18, 1190 Vienna, Austria. (1)