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TranscriptomicsDetection of circRNA in Drosophila Fly heads and S2 cells using RNA-seq with or without RNaseR tretment
We determined circRNA abundance in fly Heads and S2 cells by generating and analyzing high-throughput RNA-sequencing libraries prepared from rRNA-depleted RNA. In order to determine whether the observed sequencing reads are due to bona fide circRNAs, we pre-treated the RNA with RNAse-R before the rR...
ORGANISM(S): Drosophila melanogaster 
2014-10-14 | E-GEOD-55872 | biostudies-arrayexpress
ProteomicsImmunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides
Circular RNAs (circRNAs) are covalently closed non-coding RNAs lacking the 5’ cap and the poly-A tail. Nevertheless, it has been demonstrated that certain circRNAs can undergo active translation. Therefore, aberrantly expressed circRNAs in human cancers could be an unexplored source of tumor-specifi...
ORGANISM(S): Homo sapiens (Human) 
2024-03-20 | PXD043989 | Pride
Immunopeptidomics Circrna Antigen discovery 
ProteomicsIdentification of circRNA-interacting proteins in pancreatic ductal adenocarcinoma
Many studies have demonstrated the importance of circRNA in regulating gene expression through functioning as microRNA sponges. However, the roles of circRNA-protein interaction are not fully understood. Importantly, how circRNA-protein interaction contributes the progression of pancreatic ductal ad...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD015048 | Pride
Circganab Circfoxk2 Pancreatic ductal adenocarcinoma Circrna-interacting proteins Circrtn4 
TranscriptomicsThe expression profiling of circular RNAs (circRNA) in human intervertebral disc degeneration (IDD)
Circular RNA expression profiling of human nucleus pulposus derived from patients with IDD in comparison with those derived from cadaveric disc as normal control. We have identified the expression profiles of miRNAs (GSE63492), lncRNAs, mRNAs (GSE56081) in IDD using 5 normal discs as control and 5 I...
ORGANISM(S): Homo sapiens 
2016-08-04 | E-GEOD-67566 | biostudies-arrayexpress
ProteomicsProfiling of protein interactions of the circRNA cZNF292 in endothelial cells
Circular RNAs are a class of non-coding RNAs mostly generated by back-splicing RNA transcripts of protein-coding gene loci. In difference to canoncial splicing, back-splicing ligates downstream splice donor site with an upstream splice acceptor generating a covalently closed circular RNA. CircRNAs h...
ORGANISM(S): Homo sapiens (Human) 
2022-11-29 | PXD029794 | Pride
Affinity purification Endothelial cells Lc-msms Circrna 
TranscriptomicsAnalysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals
Circular RNAs (circRNAs) are a large class of animal RNAs. To investigate possible circRNA functions, it is important to understand circRNA biogenesis. Besides human Alu repeats, sequence features that promote exon circularization are largely unknown. We experimentally identified new circRNAs in C. ...
ORGANISM(S): Caenorhabditis elegans 
2015-01-06 | E-GEOD-63823 | biostudies-arrayexpress
GenomicscircRNA-sequencing
circRNA-sequencing
PRJNA851382 | ENA
GenomicscircRNA-sequencing
circRNA-sequencing
PRJNA423229 | ENA
GenomicsCLL plasma circRNA microarray
CLL plasma circRNA microarray
PRJNA543779 | ENA
GenomicsMammalian circRNA Atlas
Mammalian circRNA Atlas
PRJNA646808 | ENA
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