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TranscriptomicsControl of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA
Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that ...
ORGANISM(S): Citrobacter rodentium 
2010-05-19 | E-GEOD-12876 | biostudies-arrayexpress
TranscriptomicsAnalysis of the evolutionary adaptation of an AraC-like global regulatory protein in the murine enteric pathogen Citrobacter rodentium
An experiment to test the equivalence of the Citrobacter rodentium RegA and E.Coli SMS 3-5 homologue 8 Conditions (4 Genotypes by 2 treatments) in duplicate. Reference design without dye swaps.
ORGANISM(S): Citrobacter rodentium 
2015-02-19 | E-GEOD-57689 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of C. rodentium
Whole genome trancription study of Citrobacter rodentium grown in rich media.
ORGANISM(S): Citrobacter rodentium 
2011-02-12 | E-MTAB-502 | biostudies-arrayexpress
ProteomicsCitrobacter rodentium ICC168 CPX SILAC
SILAC experiment to investigate proteome changes in response to the disruption of CPX in Citrobacter rodentium ICC168.
ORGANISM(S): Citrobacter rodentium ICC168 
2019-01-07 | PXD009049 | Pride
Lc-ms Bacterial Silac 
GenomicsCitrobacter Rodentium HppXCROD2: A plasmid-encoded H-NS selectively binds its own plasmid
ChIP-seq of H-NSchr, HppXCROD2, and sigma 70 in Citrobacter rodentium ICC168 and E. coli MG1655
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2026-05-25 | E-MTAB-17049 | biostudies-arrayexpress
GenomicsCitrobacter rodentium
Citrobacter rodentium Genome sequencing and assembly
PRJNA1099276 | ENA
ProteomicsC. rodentium remodels metabolism in IEC
The mechanisms by which the mouse pathogen Citrobacter rodentium triggers effacement of the brush border microvilli, colitis, hyperplasia and dysbiosis remain poorly understood. We investigated the impact of C. rodentium infection on the proteomic and metabolic landscapes of intestinal epithelial ce...
ORGANISM(S): Citrobacter rodentium Mus musculus (Mouse) 
2018-01-10 | PXD005004 | Pride
Colon Lc-msms Citrobacter rodentium Mouse Tmt Phosphorylation 
TranscriptomicsGene expression in IL-10-deficient and wild-type mice following Citrobacter rodentium infection
To further understand immune mechanims involved in regulating intestinal inflammation, we employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential of regulating inflammation in the absence of IL-10. Whole colon tissue from IL-10-deficient and...
ORGANISM(S): Mus musculus 
2014-03-12 | E-GEOD-55812 | biostudies-arrayexpress
GenomicsCitrobacter rodentium ICC168
Citrobacter rodentium ICC168 genome sequencing project
PRJEA34685 | ENA
TranscriptomicsBic v wt expression array1
global gene expression in caecal patch and colon of miR-155 deficient and C57BL/6 mice following infection with Citrobacter rodentium
ORGANISM(S): Mus musculus 
2012-09-30 | E-MTAB-1301 | biostudies-arrayexpress
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