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ProteomicsAerobic heterotrophic denitrification
Roothans et al., analyzed heterotrophic denitrification processes that can be an important source of nitrous oxide. We employed planktonic nitrification-inhibited denitrifying enrichment cultures under alternating oxic-anoxic conditions. The dynamic conditions resulted in a general presence of the d...
ORGANISM(S): Escherichia coli 
2024-07-17 | PXD042057 | Pride
N2o Heterotrophic denitrification Shotgun proteomics 
ProteomicsCompetition for electrons favors N2O reduction in denitrifying Bradyrhizobium isolates
Bradyrhizobia are common members of soil microbiomes and known as N2-fixing symbionts of economically important legumes. Many are also denitrifiers, which can act as sinks or sources for N2O. Inoculation with compatible rhizobia is often needed for optimal N2-fixation, but the choice of inoculant ma...
ORGANISM(S): Bradyrhizobium 
2021-09-27 | PXD023200 | Pride
Denitrification Bradyrhizobium 
ProteomicsExploring the molecular machinery of denitrification in Haloferax mediterranei through proteomics
Many proteins and enzymes involved in denitrification in haloarchaea can be inferred to be located between the cytoplasmic membrane and the S-layer, based on the presence of a Tat signal sequence and the orientation of the active site that some of these enzymes have. The membrane fraction of the hal...
ORGANISM(S): Haloferax mediterranei ATCC 33500 
2020-12-07 | PXD022473 | Pride
Electron transfer Denitrification Micelles. Proteomics Detergents Haloferax Anaerobiosis Liquid chromatography-mass spectrometry Haloarchaea 
GenomicsBiological denitrification
Biological denitrification Raw sequence reads
PRJNA1398933 | ENA
Genomicsdenitrification and elevated temperature
denitrification and elevated temperature
PRJEB55872 | ENA
TranscriptomicsThe global response regulator RegR controls expression of denitrification genes in Bradyrhizobium japonicum
Bradyrhizobium japonicum RegSR regulatory proteins belong to the family of two-component regulatory systems, and orthologs are present in many Proteobacteria where they globally control gene expression mostly in a redox-responsive manner. In this work, we have performed a transcriptional profiling o...
ORGANISM(S): Bradyrhizobium japonicum 
2014-09-01 | E-GEOD-56668 | biostudies-arrayexpress
ProteomicsAnoxia in Ralstonia eutropha H16
Ralstonia eutropha H16 is a denitrifying microorganism able to use nitrate and nitrite as terminal electron acceptors under oxygen deprivation. To identify proteins showing an altered expression pattern in response to oxygen supply, R. eutropha cells grown aerobically and anaerobically were compared...
ORGANISM(S): Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha) 
2014-09-01 | PXD000888 | Pride
Denitrification Membrane proteins Ralstonia eutropha h16 Anaerobiosis Spectral counting 
TranscriptomicsTranscriptomic profiling of haloarchaeal denitrification through RNA-Seq analysis
Denitrification, a crucial biochemical pathway prevalent among haloarchaea in hypersaline ecosystems, has garnered considerable attention in recent years due to its ecological implications. Nevertheless, the underlying molecular mechanisms and genetic regulation governing this respiration/detoxifica...
ORGANISM(S): Haloferax mediterranei 
2024-04-22 | GSE245042 | GEO
GenomicsPacking from denitrification reactors
Packing from denitrification reactors Raw sequence reads
PRJNA838949 | ENA
GenomicsAutotrophic and heterotrophic denitrification
Autotrophic and heterotrophic denitrification Raw sequence reads
PRJNA669601 | ENA
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