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Unknown (38199)
Transcriptomics (9776)
Genomics (8020)
Proteomics (1203)
Metabolomics (269)
Other (152)
Methylation profiling (109)
Clinical (35)
Genomic (33)
Models (18)
Multiomics (2)

Organisms

Mus musculus (3463)
Homo sapiens (2538)
Drosophila melanogaster (1167)
Caenorhabditis elegans (843)
Arabidopsis thaliana (540)
Danio rerio (350)
Rattus norvegicus (265)
Bos taurus (156)
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Plasmodium falciparum (108)
Gallus gallus (103)
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Xenopus laevis (94)
Glycine max (85)
Triticum aestivum (62)
Oryza sativa Japonica Group (60)
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Hordeum vulgare (45)
Vitis vinifera (43)
Saccharomyces cerevisiae (42)
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Macaca mulatta (34)
Ovis aries (31)
Apis mellifera (28)
Oncorhynchus mykiss (28)
Brassica napus (25)
Oryza sativa Indica Group (24)
cellular organisms (9)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Mus musculus (1663)
Homo sapiens (1004)
Danio rerio (175)
Drosophila melanogaster (147)
Arabidopsis thaliana (145)
Caenorhabditis elegans (134)
Bos taurus (99)
Xenopus laevis (82)
Plasmodium falciparum (73)
Oryza sativa (60)
Gallus gallus (58)
Glycine max (52)
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Rattus norvegicus (52)
Sus scrofa (48)
Xenopus tropicalis (30)
Solanum lycopersicum (27)
Vitis vinifera (27)
Plasmodium berghei (23)
Triticum aestivum (22)
Oryza sativa Japonica Group (21)
Gossypium hirsutum (16)
Toxoplasma gondii (16)
Capra hircus (14)
Ovis aries (13)
Brassica napus (11)
Macaca mulatta (10)
Plasmodium falciparum 3D7 (9)
Sorghum bicolor (9)
Macaca fascicularis (8)

Repository

biostudies-arrayexpress (8197)
ENA (6134)
geo (3535)
pride (870)
MetaboLights (259)
EGA (191)
MassIVE (136)
iProX (105)
jPOST (36)
dbGaP (33)
PAXDB (30)
BioModels (17)
PanoramaPublic (13)
PeptideAtlas (8)
GPMDB (7)
GNPS (6)
MetabolomicsWorkbench (4)
EVA (3)
ExpressionAtlas (1)
FAIRDOMHub (1)
NODE (1)

Tissue

Cell culture (123)
Embryo (62)
Brain (46)
Plant cell (41)
Whole body (41)
Epithelial cell (36)
Blood (30)
Embryonic stem cell (25)
Leaf (25)
Kidney (22)
Liver (22)
Blood plasma (21)
Permanent cell line cell (21)
Lung (19)
Oocyte (18)
Early embryonic cell (15)
Root (15)
Stem cell (14)
Fibroblast (13)
Blood cell (12)
Blood serum (12)
Colon (11)
Heart (11)
Erythrocyte (10)
Cell suspension culture (9)
Seed (9)
Testis (9)
Bone marrow (8)
Blood (3)
Embryonic cells (1)

Disease

Normal (37)
Neuroblastoma (7)
Cancer (4)
COVID-19 (3)
Melanoma (3)
Porphyria NOS (2)
Colon adenocarcinoma (2)
Not infected (2)
Ovarian tumor (2)
Congential heart disease (1)
With bone lytic lesion (1)
Toxicity (1)
Lymph node metastasis (1)
Early stage liver carcinogenesis (1)
MAS (1)
Benign nevi (1)
Malignant testicular germ cell tumor (1)
DNA damage (1)
Nondiabetic (1)
Acute erythroid leukemia (1)
Cryptorchidism (1)
Severe malaria (1)
Primary medulloblastoma (1)
Uninfected 11dpi (1)
Tumor (1)
Specific-pathogen free (SPF) (1)
Diseased (1)
Spindle cell tumor (1)
Autoimmune disorder (1)
Whitehart (1)

Technology Type

Mass Spectrometry (874)
Shotgun proteomics (494)
Mass spectrometry (190)
Bottom-up proteomics (188)
Affinity purification coupled with mass spectrometry proteomics (94)
Data-dependent acquisition (86)
Mass spectrometry assay (55)
Data-independent acquisition (48)
Gel-based experiment (39)
NMR spectroscopy (15)
Illumina HiSeq 2000 (6)
NMR spectroscopy assay (6)
ESI (4)
ILLUMINA, Illumina HiSeq 2000 (3)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
HiSeq X Ten (ILLUMINA) (1)
NextSeq 500, ILLUMINA (1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 2000, GenomeWideSNP_6-BirdseedV2 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina MiSeq (1)

Instrument Platform

Illumina NovaSeq 6000 (157)
Illumina HiSeq 2500 (133)
Illumina HiSeq 2000 (127)
NextSeq 500 (111)
Illumina HiSeq 4000 (98)
NextSeq 550 (24)
Illumina NovaSeq X (19)
Illumina Genome Analyzer IIx (18)
Illumina Genome Analyzer II (18)
Illumina MiSeq (16)
NextSeq 2000 (15)
Scanning hardware (11)
Axon- GenePix4000B (10)
Illumina HiSeq 1500 (10)
Illumina HiSeq 3000 (9)
HiSeq X Ten (8)
G2565BA DNA microarray scanner [Agilent] (7)
N/A (7)
Chromium 10x (6)
ScanArray Express HT (6)
Illumina HiSeq 1000 (6)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (5)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (5)
Agilent G2505B scanner (5)
ArrayWoRx Biochip Reader [Applied Precision] (5)
DNBSEQ-G400 (5)
Single cells were captured using the 10x Genomics Chromium Controller. (4)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
See manuscript (4)

Publication Date

2013 (1453)
2010 (1106)
2011 (1105)
2014 (995)
2012 (916)
2015 (878)
2025 (620)
2024 (589)
2026 (564)
2023 (564)
2016 (564)
2022 (513)
2008 (512)
2021 (452)
2020 (434)
2009 (411)
2019 (357)
2018 (320)
2017 (289)
2007 (261)
2005 (124)
2006 (114)
2004 (50)
2003 (8)
2002 (3)

UNIPROT ID/AC

P25084 (1)
P42212 (1)
Q21217 (1)
Q0PDK5 (1)
F5GU77 (1)
O02092 (1)
Q8MXT1 (1)
B6VQ90 (1)
B0M0N9 (1)
H2L2H2 (1)
B0M0P0 (1)
H2L2H3 (1)
Q19013 (1)
Q93650 (1)
P30645 (1)
Q27483 (1)
Q22797 (1)
P54002 (1)
Q23323 (1)
G8JY39 (1)
Q22949 (1)
O17731 (1)
Q22100 (1)
Q9XUY5 (1)
Q21625 (1)
G8JYF6 (1)
Q9N2V9 (1)
A0FLQ6 (1)
Q22494 (1)
P91266 (1)

ENSEMBL ID

ENSMUSG00000057465 (5)
ENSMUSG00000072849 (5)
ENSMUSG00000076586 (1)
ENSMUSG00000076591 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094930 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000098814 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:30769 (69)
CHEBI:15741 (54)
CHEBI:6650 (53)
CHEBI:15428 (51)
CHEBI:16335 (51)
CHEBI:17368 (50)
CHEBI:28044 (48)
CHEBI:28300 (47)
CHEBI:27897 (47)
CHEBI:30915 (46)
CHEBI:22660 (45)
CHEBI:25017 (45)
CHEBI:18012 (45)
CHEBI:15891 (43)
CHEBI:15354 (43)
CHEBI:17596 (43)
CHEBI:16449 (42)
CHEBI:16704 (42)
CHEBI:26271 (41)
CHEBI:16750 (41)
CHEBI:24898 (41)
CHEBI:17568 (41)
CHEBI:18237 (40)
CHEBI:16708 (40)
CHEBI:16015 (40)
CHEBI:18186 (39)
CHEBI:38068 (1)
CHEBI:50183 (1)
CHEBI:56080 (1)
CHEBI:33699 (1)

Metabolite Name

Adenosine (38)
Hypoxanthine (38)
Phenylalanine (35)
Glutamine (35)
Adenine (34)
Taurine (33)
Citric acid (33)
Guanine (33)
Uracil (32)
Xanthine (32)
Guanosine (32)
Inosine (32)
Choline (31)
L-Phenylalanine (31)
Alanine (30)
Cytidine (30)
L-Tryptophan (29)
Uridine (29)
Betaine (28)
Sucrose (27)
Creatinine (27)
L-Tyrosine (27)
Leucine (26)
Glycine (26)
Valine (26)
L-Histidine (26)
Tyrosine (26)
Threonine (26)
Azelaic acid (26)
Creatine (26)

First Public Date

2014 (914)
2024 (673)
2025 (652)
2026 (583)
2023 (557)
2022 (433)
2021 (405)
2020 (386)
2019 (349)
2018 (309)
2017 (294)
2015 (246)
2013 (169)
2016 (159)
2012 (2)
2011 (2)
2010 (1)

Modelling Approach

Computational model (5)
Ordinary differential equation model (5)
Machine learning (1)
Boolean model (1)
Other (1)
Population model (1)
Constraint-based model (1)

Study status

Completed (11)
Not provided (10)
Recruiting (6)
Not yet recruiting (3)
Terminated (2)
Suspended (1)
Active, not recruiting (1)
Withdrawn (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (5)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
University of Edinburgh (5)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (4)
German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
IRCCS Istituto G Gaslini (4)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (3)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (3)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (3)
Federal University of Rio de Janeiro (3)
USDA-ARS (3)
University of Vienna (3)
1 Institute for Integrated Stress Response Signaling, Faculty of Medicine, University Hospital Cologne, Cologne, Germany 2 Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany (2)
Aarhus University Department of Biomedicine Høegh-Guldbergsgade 10 DK-8000 Aarhus C (2)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany. (2)
Department of Biological Sciences at Macquarie University (2)
Department of Chemistry & Biochemistry, University of Maryland at College Park (2)
Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195 USA (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Div. Clinical Protein Science and Imaging, Dept. of Clinical Sciences and Dept. of Biomedical Engineering, Lund University, Sweden (2)
Division of Infectious Diseases and International Medicine Department of Internal Medicine Morsani College of Medicine University of South Florida (2)
EDyP (2)
Fondazione Ri.Med Department of Laboratory Medicine and Advanced Biotechnologies, Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione (IRCCS - ISMETT) Via Ernesto Tricomi, 5 - 90127 Palermo (2)

Keyword

Colorectal (2)
Screening (2)
Antibodies (2)
Antibodies, Monoclonal (2)
Colorectal cancer, MSI, TS, DPD, EGFR, chemotherapy. (1)
Actigraphy (1)
Major Depression Inventory (MDI) (1)
Insomnia Severity Index (ISI) (1)
Polydextrose (1)
Non-digestible carbohydrate (1)
Biomaker (1)
Multi-modal intervention (1)
Geriatric Unit (1)
Bowel Dysfunction (1)
Fecal Microbiota Transplantation (1)
Washed Microbiota Transplantation (1)
Oncotherapy (1)
Intestinal dysbiosis (1)
Peritoneal Metastasis (1)
IDEAL (1)
PCI (1)
CRPM (1)
Colorectal Peritoneal Metastasis (1)
PROMs (1)
Patient Reported Outcome Measures (1)
Complex Intervention Protocol (1)
Postoperative (1)
Next generation sequencing (1)
Mitomycins (1)
Mitomycin (1)

IsPrivate

False (17)

Model Flag

Non Kinetic (2)

Submitter Keywords

Ersilia (6)
Machine Learning Model (6)
FAIR-AIML (2)
COVID-19 (1)

Classification

protozoa (145)
helminths (18)
bacteria (12)
fungi (9)

Modification

4x(15)N labeled L-arginine (5)
15.994915 (4)
2x(15)N labeled L-lysine (4)
N6 (4)
42.010565 (2)
57.021464 (2)
-17.026549 (1)
0.984016 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
6.020129 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (4197)
RNA-seq of coding RNA (1097)
ChIP-seq (996)
ChIP-chip by tiling array (590)
RNA-seq of non coding RNA (228)
Methylation profiling by array (135)
RNA-seq of coding RNA from single cells (112)
Comparative genomic hybridization by array (92)
Transcription profiling by tiling array (89)
Unknown experiment type (86)
Methylation profiling by high throughput sequencing (86)
Other (77)
ChIP-chip by array (44)
DNA-seq (32)
RNA-seq of total RNA (32)
Transcription profiling by RT-PCR (31)
Animal - High-throughput sequencing (28)
Transcription profiling by SAGE (27)
MicroRNA profiling by array (26)
Genotyping by array (23)
ATAC-seq (17)
Plant - High-throughput sequencing (12)
Cell line - High-throughput sequencing (11)
Single nucleus RNA sequencing (10)
Human - High-throughput sequencing (9)
Bisulfite-seq (8)
ScATAC-seq (8)
High-throughput sequencing (7)
RNAi profiling by array (7)
MicroRNA profiling by high throughput sequencing (7)

Release Date

2022 (4882)
2023 (4351)
2021 (4269)
2025 (4148)
2024 (3683)
2020 (3377)
2019 (2613)
2018 (2118)
2013 (2093)
2015 (1939)
2016 (1925)
2014 (1890)
2017 (1842)
2011 (1469)
2010 (1432)
2012 (1411)
2008 (709)
2009 (664)
2026 (564)
2007 (353)
2006 (208)
2005 (169)
2004 (96)
2003 (44)
2002 (43)
2001 (25)
2000 (24)
1999 (22)
1998 (18)
1997 (8)

Location

United States (7)
China (5)
France (5)
Denmark (3)
Australia (3)
United Kingdom (3)
Turkey (2)
Italy (2)
Canada (2)
Cyprus (1)
Slovenia (1)
Taiwan (1)
Bulgaria (1)
Greece (1)
South Korea (1)
Spain (1)
Belgium (1)
Japan (1)

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Comprehensive transcriptome and metabolome analysis revealed the primary molecular regulatory pathways of skin development in Yulin black duck during embryonic stage

Skin color is one of the key characteristics the duck possesses which is used to determine the market value because it affects the consumer's purchasing decisions. People tend to prefer ducks with black skin because they are more suitable for making soup. This study was conducted to identify the sig...

2026-08-24 | MTBLS14916 | MetaboLights

Metabolic alterations in pea leaves during arbuscular mycorrhiza development

Arbuscular mycorrhiza (AM) is known to be a mutually beneficial plant-fungal symbiosis; however, the effect of mycorrhization is heavily dependent on multiple biotic and abiotic factors. Therefore, for the proper employment of such plant-fungal symbiotic systems in agriculture, a detailed underst...

2020-02-09 | MTBLS893 | MetaboLights

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development (GC-MS assay)

Seed development dedicates to reserve synthesis and accumulation and uncovering its genetic and biochemical mechanisms has been a major research focus. Although proteomic and transcriptomic analyses revealed dynamic changes of genes and enzymes involved, the information regarding concomitant meta...

2016-05-03 | MTBLS288 | MetaboLights

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development (LC-MS pos assay)

2016-05-03 | MTBLS286 | MetaboLights

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development (LC-MS neg assay)

2016-05-03 | MTBLS287 | MetaboLights

Stage-specific metabolic responses in blue mussels to marine shipping-related acoustic and chemical stressors revealed by nuclear magnetic resonance

Maritime traffic exposes coastal organisms to both acoustic disturbance and chemical pollution, yet how these stressors affect and interact across early developmental stages remains poorly understood. We investigated stage-specific metabolic responses of blue mussel (Mytilus edulis) larv...

2026-06-15 | MTBLS13945 | MetaboLights

Organic Acids Modulate Systemic Metabolic Perturbation Caused by Salmonella Pullorum Challenge in Early-Stage Broilers

The objectives of this study were to determine the protective effects of organic acids (OA) in broilers exposed to Salmonella Pullorum challenge at early stage and to explore the potential benefits of OA by metabolomics analysis. The treatment groups included non-challenged, S. Pullorum-challenged, ...

2021-05-17 | MTBLS1274 | MetaboLights

Assessment of phenotypic trait plasticity in the oilseed Camelina sativa using integrated early-stage abiotic stress and field studies

Connecting the characterisation of juvenile (pre-anthesis) plant stress responses undertaken in controlled environments to field agronomic performance is a challenge. The oilseed crop Camelina sativa (camelina), with its innate resilience and plasticity, presents an opportunity to understand both...

2026-02-09 | MTBLS9839 | MetaboLights

Identification of distinct metabolic perturbations and associated immunomodulatory events during intra-erythrocytic development stage of pediatric Plasmodium falciparum malaria

Not available

ORGANISM(S): Homo sapiens

ST001400 | MetabolomicsWorkbench

Metabolomic profiling of seedless oil palm mesocarp during fruit development

This study investigated developmental changes in the mesocarp metabolome of seedless oil palm (Elaeis guineensis) at 95, 125, and 185 days after pollination. Mesocarp samples from three developmental stages (FL1, FL2, and FL3) were analyzed by untargeted HILIC LC-MS/MS using two biological replicate...

2026-10-02 | MTBLS15725 | MetaboLights