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Proteomicsdia-PASEF analysis of human amygdala in Alzheimer’s disease
dia-PASEF analysis of human amygdala in Alzheimer’s disease
ORGANISM(S): Homo sapiens (Human) 
2023-06-28 | PXD038322 | Pride
Dia-pasef Alzheimer Human Amygdala 
ProteomicsA hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer
Generation of a new library of targeted mass spectrometry assays for accurate protein quantification in triple negative breast cancer (TNBC) tissues. Primary tumor tissue lysates from 105 TNBC patients treated at Masaryk Memorial Cancer Institute (MMCI) in Brno, Czech Republic, were used to generate...
ORGANISM(S): Homo sapiens (Human) 
2024-05-31 | PXD047793 | Pride
Proteomics Mass spectrometry Data independent acquisition Assay library Triple-negative breast cancer 
Unknowndia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Not available
S-EPMC9270362 | biostudies-literature
UnknownAssessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry.
Not available
S-EPMC11480776 | biostudies-literature
ProteomicsRapid and ion mobility-resolved phosphoproteomics with dia-PASEF
Mass spectrometry-based phosphoproteomics has identified >150,000 post-translational phosphorylation sites in the human proteome. To disentangle their functional relevance, complex experimental designs that require increased throughput are now coming into focus. Here, we apply dia-PASEF on a trapped...
ORGANISM(S): Homo sapiens (Human) 
2022-10-26 | PXD033904 | Pride
Tims Technology Pasef Dia-pasef Phosphoproteomics Data-independent acquisition Ion mobility 
UnknownIncreasing taxonomic and functional characterization of host-microbiome interactions by DIA-PASEF metaproteomics.
Not available
S-EPMC10613666 | biostudies-literature
Proteomicsdia-PASEF HeLa dilution series 0.2ng - 200ng on Bruker timsTOF Pro 2
Different sample preparation methods were tested for HeLa proteome analysis. A sample obtained using sodium deoxycholate-based lysis allowed identification of the highest number of proteins. For this sample, a dilution series was acquired in triplicates ranging from 0.2ng to 200ng. All measurements ...
ORGANISM(S): Homo sapiens (Human) 
2022-06-20 | PXD029836 | Pride
Dia-pasef diapasef dia-nn hela 
ProteomicsComprehensive Proteomics Profiling of Zebrafish Retina Using a Hybrid DDA/DIA-PASEF Spectral Library on a timsTOF Pro 2 Mass Spectrometer
The zebrafish (Danio rerio) retina has been increasingly used for studying vertebrate visual processing and ocular growth regulation as it has a high anatomical and physiological similarity to the human eye. Recently, the integration of trapped ion mobility spectrometry (TIMS) with parallel accumula...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2026-06-17 | PXD076440 | Pride
Dia Retina Zebrafish Dda 
UnknownRapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF.
Not available
S-EPMC9465115 | biostudies-literature
Proteomicsprm-PASEF and g-dia-PASEF analysis of plasma samples from colorectal cancer and control patients
Quantitative analysis of 10 CRC vs 10 control human plasma samples with the prm-PASEF and g-dia-PASEF acquisition methodes
ORGANISM(S): Homo sapiens (Human) 
2023-04-11 | PXD036594 | Pride
Pasef prm dia plasma colorectal cancer 
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