murine heart - OmicsDI

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Unknown (3327)
Transcriptomics (1238)
Genomics (532)
Proteomics (113)
Metabolomics (23)
Other (13)
Methylation profiling (1)

Organisms

Mus musculus (770)
Homo sapiens (254)
Rattus norvegicus (30)
Arabidopsis thaliana (23)
Danio rerio (16)
Sus scrofa (14)
Saccharomyces cerevisiae (12)
Drosophila melanogaster (11)
Gallus gallus (8)
Listeria monocytogenes (6)
Bos taurus (6)
Oryza sativa Japonica Group (6)
Caenorhabditis elegans (5)
Oryza sativa (4)
Escherichia coli (4)
Streptococcus pneumoniae D39 (4)
Bacillus subtilis subsp. subtilis str. 168 (3)
Haemophilus influenzae (3)
Macaca mulatta (3)
Zea mays (3)
Boehmeria nivea (2)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Casuarina glauca (2)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
Staphylococcus aureus subsp. aureus str. Newman (2)
Haemophilus influenzae R2866 (2)
Tetrahymena thermophila (2)
Streptococcus mutans UA159 (2)
Aspergillus niger (2)
Brugia pahangi (2)

Organisms

Mus musculus (375)
Homo sapiens (30)
Rattus norvegicus (7)
Danio rerio (4)
Mus (1)
Macaca mulatta (1)
Streptococcus dysgalactiae subsp. equisimilis GGS_124 (1)
mouse metagenome (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (981)
ENA (481)
geo (325)
pride (98)
MetaboLights (21)
MassIVE (5)
jPOST (4)
iProX (2)
MetabolomicsWorkbench (2)
ExpressionAtlas (1)
EGA (1)

Tissue

Heart (76)
Liver (10)
Kidney (9)
Spleen (8)
Lung (8)
Cell culture (8)
Blood plasma (6)
Cardiac muscle cell (6)
Brain (4)
Aorta (3)
Fibroblast (3)
Primary cell (3)
Adipose tissue (2)
Bone marrow (2)
Colon (2)
Epididymal white adipose tissue (2)
Fibroblast of cardiac tissue (2)
Macrophage (2)
Pancreas (2)
Skin (2)
Testis (2)
Adipose tissue (1)
Heart (1)
Adrenal gland (1)
Atherosclerotic plaque (1)
Bladder (1)
Blood cell (1)
Blood platelet (1)
Blood serum (1)
Blood vessel endothelial cell (1)

Disease

Cardiovascular system disease (8)
Myocardial ischemia (4)
Normal (3)
Bacterial sepsis (2)
Heart disease (2)
Normal transgenic (transgenic betaARKct) (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
Osteosarcoma subtype fibroblastic (1)
Primary effusion lymphoma (PEL) (1)
Sham infected (1)
Glioblastoma (1)
Neuroblastoma (1)
Heart disease (1)
Acute leukemia (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
Atherosclerosis (1)
Breast cancer (1)
Cervix carcinoma (1)
Congestive heart failure (1)
Dilatation of the ascending aorta (1)
Dilated cardiomyopathy (1)
Heart failure (1)
Heart septal defect (1)
Hypertension (1)
Myocardial infarction (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (100)
Shotgun proteomics (61)
Bottom-up proteomics (15)
Mass spectrometry (14)
Data-independent acquisition (12)
Data-dependent acquisition (11)
Mass spectrometry assay (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
ESI (2)
DiaPASEF (2)
SRM/MRM (2)
SWATH MS (2)
Top-down proteomics (2)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (20)
Illumina HiSeq 2500 (14)
Illumina HiSeq 4000 (13)
Illumina HiSeq 2000 (7)
NextSeq 500 (4)
Gas Chromatography MS - positive (4)
Illumina MiSeq (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Orbitrap Fusion Lumos (2)
Q Exactive HF-X (2)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
FACS (1)
Do not apply (1)
428 [Affymetrix] (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Generation III Array Scanner [Amersham] (1)
Scanning hardware (1)
NextSeq 2000 (1)
Illumina TruSeq® Stranded mRNA Library Preparation Kit (Illumina) (1)
DNBSEQ-G400 (1)
Ion Torrent S5 XL (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)

Publication Date

2015 (154)
2014 (140)
2012 (139)
2010 (133)
2013 (121)
2011 (100)
2026 (78)
2025 (68)
2008 (63)
2022 (58)
2016 (56)
2024 (52)
2020 (44)
2023 (41)
2009 (41)
2021 (37)
2007 (29)
2019 (27)
2017 (20)
2018 (16)
2005 (8)
2006 (7)
2003 (2)
2004 (1)

CHEBI ID

CHEBI:18012 (7)
CHEBI:15741 (7)
CHEBI:30769 (7)
CHEBI:15428 (6)
CHEBI:16857 (5)
CHEBI:17754 (5)
CHEBI:17203 (5)
CHEBI:17196 (5)
CHEBI:16335 (5)
CHEBI:18019 (5)
CHEBI:32816 (5)
CHEBI:30915 (5)
CHEBI:16027 (5)
CHEBI:16708 (5)
CHEBI:18050 (5)
CHEBI:16015 (5)
CHEBI:17115 (5)
CHEBI:16737 (5)
CHEBI:16414 (5)
CHEBI:17191 (5)
CHEBI:15354 (5)
CHEBI:15603 (5)
CHEBI:16643 (5)
CHEBI:17895 (5)
CHEBI:16865 (4)
CHEBI:16113 (4)
CHEBI:17154 (4)
CHEBI:16449 (4)
CHEBI:18095 (4)
CHEBI:15611 (4)

Metabolite Name

L-Tryptophan (4)
L-Glutamine (4)
Adenine (4)
L-Tyrosine (4)
D-Glucose (3)
L-Proline (3)
Citrulline (3)
Choline (3)
Taurine (3)
Adenosine (3)
Guanine (3)
L-Histidine (3)
Myo-Inositol (3)
Citrate (3)
Uridine (3)
L-Valine (3)
L-Isoleucine (3)
L-Leucine (3)
L-Methionine (3)
L-Phenylalanine (3)
L-2-aminoadipic acid (2)
CL(16:1(9Z)/16:1(9Z)/18:2(9Z,12Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
Trihexosylceramide (d18:1/24:1(15Z)) (2)
TG(22:4(7Z,10Z,13Z,16Z)/22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
TG(22:1(13Z)/19:2n6/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
TG(15:0/22:1(13Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
TG(15:0/18:0/24:1(15Z)) (2)
PIP(16:1(9Z)/16:1(9Z)) (2)
PA(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/24:1(15Z)) (2)
Lucyoside M (2)

First Public Date

2026 (66)
2024 (60)
2025 (59)
2014 (57)
2022 (51)
2020 (39)
2023 (38)
2021 (36)
2019 (23)
2017 (18)
2018 (12)
2015 (10)
2013 (7)
2016 (5)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (688)
RNA-seq of coding RNA (138)
Unknown experiment type (25)
RNA-seq of non coding RNA (23)
RNA-seq of coding RNA from single cells (21)
ChIP-seq (17)
Methylation profiling by array (10)
Transcription profiling by SAGE (9)
Transcription profiling by tiling array (8)
Other (8)
Transcription profiling by RT-PCR (7)
Comparative genomic hybridization by array (5)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
RNA-seq of total RNA (2)
Baseline (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
RNAi profiling by array (1)
Ribo-seq (1)
MicroRNA profiling by array (1)

Release Date

2021 (328)
2023 (326)
2022 (325)
2020 (322)
2015 (275)
2018 (262)
2025 (257)
2024 (252)
2019 (243)
2014 (243)
2016 (208)
2017 (203)
2012 (195)
2013 (192)
2010 (183)
2011 (161)
2008 (95)
2009 (86)
2026 (41)
2007 (39)
2005 (17)
2006 (16)
2000 (10)
2004 (8)
2001 (5)
2003 (4)
2002 (4)
1999 (3)
1998 (3)
1997 (1)

Lab affiliation

J. Craig Venter Institute, Rockville, MD 20850 (3)
Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (2)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (2)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (2)
Affiliation CECAD Research Center, University Hospital Cologne (1)
Agnes Ginges Centre for Molecular Cardiology (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Baker Heart & Diabetes Institute (1)
Boston University (1)
Brain and Mind Research Institute Weill Cornell Medicine 407 E 61st St, New York, NY, 10065 United States (1)
Cardiovascular Division, King's College London, London, UK (1)
Center for Interdisciplinary Cardiovascular Sciences, Department of Medicine, Briham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC) and CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Biochemistry, 10117 Berlin, Germany; Deutsches Zentrum für Herz-Kreislauf-Forschung, partner site Berlin, 10117 Berlin, Germany (1)
Charles Perkins Centre, University of Sydney (1)
Cleveland Clinic (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biological Engineering, Massachusetts Institute of Technology (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, 8093, Switzerland (1)
Department of Biology, UNC-Chapel Hill (1)
Department of Biomedical Sciences Cardiac Proteomics Lab University of Copenhagen Denmark (1)
Department of Biomedical Sciences, Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
Department of Biomedical Sciences, University of Copenhagen, Denmark (1)
Department of Biomedicine, Aarhus University, Aarhus, Denmark STENO Diabetes Center Aarhus, Aarhus, Denmark (1)
Department of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research (1)
Department of Cardiology, Medical University Hospital, Heidelberg, Germany (1)
Department of Cardiology, Shenzhen Cardiovascular Minimally Invasive Medical Engineering Technology Research and Development Center, Shenzhen People’s Hospital (The Second Clinical Medical College, Jinan University; The First Affiliated Hospital, Southern University of Science and Technology), Shenzhen 518020, China (1)

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GRSF1 Protects Against Heart Failure by Maintaining BCAA Homeostasis

BACKGROUND: Imbalances in cardiac branched-chain amino acid (BCAA) metabolism and mitochondrial homeostasis are implicated in the onset and development of heart failure. However, the mechanisms triggering the downregulation of cardiac BCAA metabolism in heart failure remain unclear. Here, we iden...

2025-10-19 | MTBLS13178 | MetaboLights

Metabolomics of brown adipose tissue in murine heart failure model

Not available

ORGANISM(S): Mus musculus

ST001961 | MetabolomicsWorkbench

Heart surfaceome profiling using biotin capture

Cell surface proteins (surfaceome) represent key signalling and interaction molecules for therapeutic targeting, biomarker profiling, and cellular phenotyping. Understanding the surfaceome of complex tissues including the heart is essential to investigate membrane composition and function in physiol...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

MSV000095912 | MassIVE

Transcriptional Atlas of Cardiogenesis Maps Congenital Heart Disease Interactome

Mammalian heart development is built on highly conserved molecular mechanisms with polygenetic perturbations resulting in a spectrum of congenital heart diseases (CHD). However, the transcriptional landscape of cardiogenic ontogeny that regulates proper cardiogenesis remains largely based on candida...

ORGANISM(S): Mus musculus

2014-05-19 | E-GEOD-51483 | biostudies-arrayexpress

Transcriptome Alteration in the Diabetic Heart by Rosiglitazone: Implications for Cardiovascular Mortality

The type 2 diabetes medication, rosiglitazone, has come under scrutiny for possibly increasing the risk of cardiac disease and death. To investigate the effects of rosiglitazone on the diabetic heart, we performed cardiac transcriptional profiling of a murine model of type 2 diabetes, the C57BL/KLS...

ORGANISM(S): Mus musculus

2012-03-28 | E-GEOD-36875 | biostudies-arrayexpress

Transcriptome profiling times series of zebrafish heart regeneration

The zebrafish has the capacity to regenerate its heart after severe injury. While the function of a few genes during this process has been studied, we are far from fully understanding how genes interact to coordinate heart regeneration. To enable systematic insights into this phenomenon, we generate...

ORGANISM(S): Danio rerio

2016-06-01 | E-GEOD-67665 | biostudies-arrayexpress

The murine lung microbiome is dysbalanced by the human pathogenic fungus Aspergillus fumigatus resulting in enrichment of anaerobic bacteria

Here, we report significant changes in the composition of the lung microbiome and metabolome of mice under immune suppression, infection of immunosuppressed mice with virulent and avirulent strains of the clinically important human-pathogenic fungus Aspergillus fumigatus, and treatment with the clin...

2025-07-04 | MTBLS12262 | MetaboLights

Comparative Effects of Statins on Murine Cardiac Gene Expression Profiles in Normal Mice

Recent clinical data suggest that the efficacy of statin treatment in patients with heart failure varies depending on the drugs administered. Therefore, the present study was undertaken to compare murine cardiac gene expression following treatment with four different statins. Statins directly regula...

ORGANISM(S): Mus musculus

2013-03-31 | E-GEOD-23101 | biostudies-arrayexpress

therapeutic CD14 heart proteome

Therapeutic remodelling and repair of murine heart induced by CD14 antibody treatment. Global (apex) heart and macrophage-derived (FACS) proteome remodelling of CD14 antibody-based therapeutic.

ORGANISM(S): Homo sapiens (Human)

2026-01-19 | PXD041192 | Pride

Detailed transcriptomics analysis of the effect of dietary fatty acids on gene regulation in the murine heart [superseries]

This SuperSeries is composed of the following subset Series: GSE30495: Detailed transcriptomics analysis of the effect of dietary fatty acids on gene regulation in the murine heart. GSE30553: Detailed transcriptomics analysis of the effect of the PPARalpha agonist Wy14,643 on gene regulation in the ...

ORGANISM(S): Mus musculus

2012-02-21 | E-GEOD-30649 | biostudies-arrayexpress

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