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ProteomicsCharacterization of the tomato fruit pericarp proteome
In this work, we present an extended characterization of the proteome of the tomato pericarp in its ripe red stage. An extensive fractionation of peptides through high pH reverse phase was performed associated to LC-MS/MS analysis on a Sciex Triple-TOF 6600.
ORGANISM(S): Solanum lycopersicum 
2016-12-22 | PXD004932 | Pride
Tomato  solanum lycopersicum  pericarp  mass-spectrometry  triple-tof 6600 
TranscriptomicsThe maize pericarp transcriptome
P1 encodes an R2R3-MYB transcription factor responsible for the accumulation of insecticidal flavones in maize silks and red phlobaphene pigments in pericarps and other floral tissues, which contributed to making P1 an important visual marker since the dawn of modern genetics. We conducted RNA-Seq u...
ORGANISM(S): Zea mays 
2012-09-14 | E-GEOD-38413 | biostudies-arrayexpress
ProteomicsCharacterization of the tomato fruit pericarp proteome (2)
In this work, we present an extended characterization of the proteome of the tomato pericarp in its ripe red stage. An extensive fractionation of peptides through high pH reverse phase was performed associated to LC-MS/MS analysis on a Thermofisher scientific Q-Exactive
ORGANISM(S): Solanum lycopersicum 
2016-12-22 | PXD004947 | Pride
Mass-spectrometry Q-exactive Plant proteomics Solanum lycopersicum Tomato 
ProteomicsProteome dynamics of the developing açaí berry pericarp (Euterpe oleracea Mart.)
A quantitative proteome analysis of four developmental stages of pericarp tissues of the açaí berry (Euterpe oleracea Mart.) was performed by the isobaric labeling of peptides with iTRAQ® 4-plex, HILIC pre-fractionation of labeled peptides and high-performance mass spectrometry analysis. This analys...
ORGANISM(S): Euterpe oleracea 
2019-12-11 | PXD015357 | Pride
Euterpe oleracea Anthocyanins biosynthetic pathway Secondary metabolism Arecaceae Açaí berry 
GenomicsThe P1 Transcription Factor Binding to the Genome
To determine which of the genes differentially expressed between P1-rr and P1-ww pericarps were immediate (direct) targets of P1, we conducted chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-Seq) using P1 polyclonal antibodies (alphaP1344) that recognize the non-conserved...
ORGANISM(S): Zea mays 
2012-09-14 | E-GEOD-38587 | biostudies-arrayexpress
TranscriptomicsRNA-seq of pericarp of purple-grain wheat Luozhen No.1 of 20 days (D20) shading treatment after pollination, against 20 DAP untreated controls
Purple-grain wheat are caused by anthocyanin accumulation in the seed coat. The anthocyanin biosynthesis and accumulation were affected by light in purple-grain wheat. The spikes of purple-grain wheat Luozhen No.1 were bagged with four-layer Kraft paper bags after pollination. To identify genes invo...
ORGANISM(S): Triticum aestivum 
2018-03-30 | E-MTAB-6398 | biostudies-arrayexpress
ProteomicsSpatially resolved proteome profiling of less than 200 cells from tomato fruit pericarp by integrating laser-capture microdissection with nanodroplet sample preparation
Proteomic data from technical developments of a nanoPOTS-based spatially resolved proteome profiling of <200 cells from tomato fruit pericarp.
ORGANISM(S): Solanum lycopersicum 
2018-08-21 | PXD010806 | Pride
Nanopots Proteomics Spatially resolved 
GenomicsPericarp of Citrus reticulata Chachi
Microorganism in the Pericarp of Citrus reticulata 'Chachi' Raw sequence reads
PRJNA986684 | ENA
TranscriptomicsTranscriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
Fruits of transgenic tomato (Solanum lycopersicum) plants engineered with ripening-induced, yeast S-adenosylmethionine decarboxylase (ySAMdc) gene, accumulate the higher polyamines spermidine (Spd) and spermine (Spm) and demonstrate ameliorated phytonutrient content, juice quality, and prolonged vin...
ORGANISM(S): Solanum lycopersicum 
2008-09-21 | E-GEOD-12338 | biostudies-arrayexpress
ProteomicsIdentification of proteins interacting with FW2.2/CNR in tomato fruit pericarp
More than 20 years ago, the FW2.2 gene was the first cloned gene underlying a Quantitative Trait Locus (QTL) governing fruit size/weight in tomato. However, despite this discovery, the molecular mechanisms by which FW2.2 acts as a negative regulator of cell divisions during fruit growth remain undec...
ORGANISM(S): Solanum lycopersicum 
2025-01-24 | PXD045350 | Pride
Fw2.2 Tomato Cnr Plasmodesmata Fruit 
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