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ProteomicsPIP protein binding in CD4+ T cells
Proteins were pulled down using PIP beads to determine what proteins may be interacting with different PIPs
ORGANISM(S): Mus musculus (Mouse) 
2024-12-16 | PXD046124 | Pride
Pip Phosphatidylinositol 
GenomicsCROP-seq + PIP-seq
CROP-seq + PIP-seq
PRJNA923463 | ENA
GenomicsEF0858-PIP variable region deep sequencing
PIP variable region deep sequencing from Enterococcal wastewater isolates
PRJEB13161 | ENA
TranscriptomicsTranscriptomic responses in Arabidopsis thaliana to PIPL3 peptide treatment
In order to investigate possible roles of IDL and PIP/PIPL peptides, the transcriptomic response of Arabidopsis seedlings to treatment with PIPL3 peptide was analysed. PIPL3 (At4g37295) was chosen, as no functional data was available for this peptide; furthermore, PIPL3 was expressed in leaf tissue ...
ORGANISM(S): Arabidopsis thaliana 
2015-07-10 | E-GEOD-66201 | biostudies-arrayexpress
GenomicsCompound PIP-RBPJ-1 treated human neural stem cells
Compound PIP-RBPJ-1 treated human neural stem cells
PRJNA432342 | ENA
OtherCROP-seq + PIP-seq
We used PIP-seq with a CROP-seq library to evaluate the feability of PIP-seq for large pooled CRISPR screens
ORGANISM(S): Homo sapiens 
2023-01-12 | GSE202915 | GEO
ProteomicsImproved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation
We present a method for FDR control of PIP, called “PIP-ECHO” (PIP Error Control via Hybrid cOmpetition) and devise a rigorous protocol for evaluating FDR control of any PIP method. Using three different datasets, we evaluate PIP-ECHO alongside the PIP procedures implemented by FlashLFQ, IonQuant, a...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-10-06 | PXD057758 | Pride
Mbr E. coli Human Lfq Quantification Pip 
TranscriptomicsCompound PIP-RBPJ-1 treated human neural stem cells
The study of the compond PIP-RBPJ-1‘ function on neural stem cell. Synthetic DNA-binding inhibitors capable of gaining precise control over neurogenesis factors could obviate the current clinical barriers associated with small molecule use in regenerative medicine. Here, we show the design and bio-e...
ORGANISM(S): Homo sapiens 
2018-07-19 | GSE109916 | GEO
ProteomicsStructure of autoinhibited Akt1 reveals mechanism of PIP 3 -mediated activation
To directly observe the conformational changes in Akt1 3P elicited by PIP 3 binding, we performed HDX-MS analysis of Akt1 3P in the presence of plasma membrane-mimicking liposomes (20% cholesterol, 30% phosphatidylcholine, 15% phosphatidylserine, 35% phosphatidylethanolamine) that contained either 0...
ORGANISM(S): Homo sapiens (Human) 
2021-09-01 | PXD022061 | Pride
Pip3 Akt Lipids Hdx-ms 
TranscriptomicsTranscriptional response of Arabidopsis thaliana in systemic acquired resistance: critical roles for pipecolic acid and salicylic acid
We investigated the relationships of the two immune-regulatory plant metabolites salicylic acid (SA) and pipecolic acid (Pip) in the establishment of plant systemic acquired resistance (SAR) in Arabidopsis thaliana induced by the bacterial pathogen Pseudomonas syringae. To characterize the transcrip...
ORGANISM(S): Arabidopsis thaliana 
2015-12-27 | E-MTAB-4151 | biostudies-arrayexpress
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