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ProteomicsA ‘proteomic ruler’ for protein copy number and concentration estimation without spike-in standards
Absolute protein quantification using mass spectrometry (MS)-based proteomics delivers protein concentrations or copy numbers per cell. Existing methodologies typically require a combination of isotope-labeled spike-in references, cell counting and protein concentration measurements. Here we present...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2014-09-17 | PXD000661 | Pride
Copy numbers Absolute quantification 
UnknownA "proteomic ruler" for protein copy number and concentration estimation without spike-in standards.
Not available
S-EPMC4256500 | biostudies-literature
OtherA proteomic ruler for protein copy number and concentration estimation without spike-in standards.
Data from ProteomeXchange, PXD ID: PXD000661. Experiment: A549, file: 20121023_EXQ4_JRW_SA_32L_3.mzml. Published as part of Mol Cell Proteomics. 2014 Sep 15 . From the Abstract: {{i}} ... Here we present a novel concept that delivers similar quantitative results directly from deep eukaryotic proteo...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32320003525 | GPMDB
Resource Reanalysis 
OtherA proteomic ruler for protein copy number and concentration estimation without spike-in standards.
Data from ProteomeXchange, PXD ID: PXD000661. Experiment: TPA_Lung, file: 20120207_EXQ6_JRW_TPA_Lung_28_1_T.mzml. Published as part of Mol Cell Proteomics. 2014 Sep 15 . From the Abstract: {{i}} ... Here we present a novel concept that delivers similar quantitative results directly from deep eukary...
ORGANISM(S): Mus_musculus_viruses, Mouse 
GPM11210029853 | GPMDB
Resource Reanalysis 
ProteomicsH.sapiens - Coronary vessel, copy number estimated from proteomic ruler (Dolletal,natcomm2017)
abundance based on copy number estimated from proteomic ruler, Interaction consistency score: 12.9, Coverage: 31
ORGANISM(S): 9606 
2017-00-00 | 442945224 | PAXDB
ProteomicsH.sapiens - Cardiac ventricle, copy number estimated from proteomic ruler (Dolletal,natcomm2017)
abundance based on copy number estimated from proteomic ruler, Interaction consistency score: 15.6, Coverage: 31
ORGANISM(S): 9606 
2017-00-00 | 1933621983 | PAXDB
ProteomicsH.sapiens - Cardiac atrium, copy number estimated from proteomic ruler (Dolletal,natcomm2017)
abundance based on copy number estimated from proteomic ruler, Interaction consistency score: 16.6, Coverage: 31
ORGANISM(S): 9606 
2017-00-00 | 3961352005 | PAXDB
ProteomicsH.sapiens - Atrioventricular valve, copy number estimated from proteomic ruler (Dolletal,natcomm2017)
abundance based on copy number estimated from proteomic ruler, Interaction consistency score: 11.2, Coverage: 30
ORGANISM(S): 9606 
2017-00-00 | 3919209491 | PAXDB
ProteomicsImpact of collagenase treatment on the proteome and transcriptome of human articular chondrocytes
Objective Human primary articular chondrocytes (hPACs) are routinely isolated from articular cartilage and for pre-clinical OA research. Collagenase digest of tissue is an essential step, yet the impact of enzymatic incubation on the phenotype of hPACs is unclear. We aim to delineate this through p...
ORGANISM(S): Homo sapiens (Human) 
2025-10-20 | PXD064948 | Pride
Collagenase Chondrocytes Osteoarthritis Transcriptomic Proteomic Phenotype 
ProteomicsH.sapiens - Arterial blood vessel, copy number estimated from proteomic ruler (Dolletal,natcomm2017)
abundance based on copy number estimated from proteomic ruler, Interaction consistency score: 14.7, Coverage: 31
ORGANISM(S): 9606 
2017-00-00 | 2845810289 | PAXDB
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