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ProteomicsPROFILING OF PLASMA PROTEINS IN RENAL CELL CARCINOMA
A comparative analysis of the protein profile of 36 blood plasma samples from patients with kidney cancer and 20 samples of healthy volunteers was carried out using ultra-high resolution panoramic mass spectrometry. The analysis of results of measurements was conducted using OMSSA proteomic search e...
ORGANISM(S): Homo sapiens (Human) 
2019-10-23 | PXD014289 | Pride
Kidney cancer Omics Protein markers Label-free quantification Panoramic mass spectrometry Postgenomic data 
ProteomicsReanalysis of dataset PXD020692: “Washington state shellfish hatchery microbiome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD020692. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): marine metagenome 
2023-11-03 | PXD038539 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD005780: “Relating human gut metagenome and metaproteome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD005780. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): human gut metagenome 
2022-05-04 | PXD032303 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD003791: “MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD003791. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): Homo sapiens (Human) 
2022-06-17 | PXD034617 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsFusarium graminearum in vitro cellular proteome
The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens mus...
ORGANISM(S): Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) 
2015-10-08 | PXD002840 | Pride
Cellular proteome In vitro Fusarium graminearum Protease Peptidase 
ProteomicsEPAC1 knockout mouse effects in platelets and plasma
ABSTRACT FOR BOTH PLASMA AND PLATELET-LYSATE In this article we describe the involvement of exchange factor activated by cAMP 1 (Epac1) in hemostasis and platelet activation. We have used plasma and platelet-lysate from EPAC1 knockout mice and wild-type control mice in label-free proteomics with an ...
ORGANISM(S): Mus musculus (Mouse) 
2017-07-25 | PXD000282 | Pride
Epac1 knockout Platelets Lc-ms Plasma Label-free 
ProteomicsDietary protein in vitro digest (LC-MS)
16 dietary protein preparations were digested according to a standardized invitro digestion (InfoGest) protocol, simulating gastrointestinal digestion. Resulting oligopeptide mixtures were subsequently analyzed by UPLC-MS using DDA shot-gun detection. Peak intensity data from MS1 spectra were obtain...
ORGANISM(S): Bos taurus (Bovine) Pisum sativum (Garden pea) Solanum tuberosum (Potato) Zea mays (Maize) Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Gallus gallus (Chicken) 
2021-09-09 | PXD021577 | Pride
Dietary protein  in vitro digest  lc-ms  de novo 
UnknownIs It Possible to Find Needles in a Haystack? Meta-Analysis of 1000+ MS/MS Files Provided by the Russian Proteomic Consortium for Mining Missing Proteins.
Not available
S-EPMC7356824 | biostudies-literature
UnknownData from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae).
Not available
S-EPMC5447515 | biostudies-literature
ProteomicsMapping the Binding Interactions Between human Gasdermin D and human Caspase-1 Using Carbene Footprinting
Carbene footprinting is a recently developed mass spectrometry-based chemical labeling technique that probes protein interactions and conformation. Here, we use the methodology to investigate binding interactions between the protease human Caspase-1 (C285A) and full-length human Gasdermin D (hGSDMD)...
ORGANISM(S): Homo sapiens (Human) 
2023-08-14 | PXD040212 | Pride
Gsdmd Footprinting Lc-ms Interaction Caspase-1 
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