somatic embryogenesis

Show results for

Unknown (733)
Transcriptomics (463)
Genomics (404)
Proteomics (52)
Methylation profiling (15)
Metabolomics (6)
Other (5)

Organisms

Mus musculus (212)
Homo sapiens (122)
Arabidopsis thaliana (76)
Drosophila melanogaster (22)
Caenorhabditis elegans (13)
Danio rerio (12)
Bos taurus (9)
Gossypium hirsutum (9)
Sus scrofa (9)
Zea mays (7)
Saccharomyces cerevisiae (6)
Gallus gallus (5)
Medicago truncatula (5)
Glycine max (5)
Ascaris suum (4)
Larix kaempferi (4)
Candida albicans (3)
Xenopus laevis (3)
Picea glauca (3)
Teleopsis quinqueguttata (2)
Sycon ciliatum (2)
Oncorhynchus mykiss (2)
Gossypium (2)
Salix viminalis (1)
Miniopterus schreibersii (1)
Pectobacterium wasabiae (1)
Proteus mirabilis (1)
Salvelinus fontinalis (1)
Nicotiana attenuata (1)
Gossypium tomentosum (1)

Organisms

Mus musculus (54)
Arabidopsis thaliana (21)
Homo sapiens (15)
Gossypium hirsutum (13)
Drosophila melanogaster (7)
Vitis vinifera (6)
Caenorhabditis elegans (5)
Elaeis guineensis (4)
Medicago truncatula (4)
Sus scrofa (4)
Danio rerio (4)
Oscheius tipulae (3)
Ascaris suum (3)
Coffea canephora (3)
Petromyzon marinus (3)
Xenopus tropicalis (3)
Cocos nucifera (3)
Zea mays (3)
Lilium pumilum (2)
Larix kaempferi (2)
Picea abies (2)
Coffea arabica (2)
Glycine max (2)
Oryza sativa (2)
Gallus gallus (2)
Xenopus tropicalis x Xenopus laevis (1)
Araucaria angustifolia (1)
Kalopanax septemlobus (1)
Pseudotsuga menziesii var. menziesii (1)
Aspilia africana (1)

Repository

biostudies-arrayexpress (424)
ENA (286)
geo (162)
pride (32)
EGA (14)
MassIVE (8)
jPOST (7)
MetaboLights (6)
iProX (5)
ExpressionAtlas (1)

Tissue

Plant cell (18)
Cell culture (12)
Embryo (6)
Cell suspension culture (4)
Early embryonic cell (2)
Flower bud (2)
Leaf (2)
Callus culture (1)
Cotyledon (1)
Embryogenic cell line (1)
Embryonic stem cell (1)
Flower (1)
Flower stalk (1)
Hypocotyl (1)
Needle (1)
Oocyte (1)
Plant embryo (1)
Rootlet (1)
Seed (1)
Somatic embryo (1)
Thallus (1)
Whole body (1)
Xylem (1)

Disease

Normal (4)
Disease free (2)
Malignant testicular germ cell tumor (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (17)
Bottom-up proteomics (8)
HDMSE (8)
Data-dependent acquisition (5)
Mass spectrometry assay (3)
Gel-based experiment (3)
Mass spectrometry (2)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (7)
Illumina NovaSeq X (4)
NextSeq 550 (4)
Illumina HiSeq 2000 (4)
Illumina Genome Analyzer II (3)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (2)
Q Exactive Plus (2)
Gas Chromatography MS - positive (2)
Axon GenePix 4000A scanning hardware (1)
Affymetrix Gene-Chip Scanner-3000-7G (1)
Genechip Hybridization Oven-645 (Affymetrix); Geneechip Fluidics Station-450 (Affymetrix) (1)
Maxwell 16 Instrument (Cat. #AS2000, Promega, Madison, WI) (1)
Axon- GenePix4000B (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
QE+ (1)
TripleTOF 6600 (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2014 (90)
2012 (77)
2013 (57)
2015 (46)
2010 (46)
2011 (41)
2025 (31)
2024 (30)
2008 (29)
2023 (25)
2022 (24)
2009 (22)
2016 (21)
2019 (17)
2020 (16)
2026 (15)
2021 (15)
2018 (14)
2007 (13)
2006 (5)
2017 (3)
2005 (2)
2004 (2)
2003 (1)

CHEBI ID

CHEBI:15901 (2)
CHEBI:16977 (2)
CHEBI:15428 (2)
CHEBI:16000 (2)
CHEBI:17268 (2)
CHEBI:16865 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:30763 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:18183 (2)
CHEBI:18050 (2)
CHEBI:422 (2)
CHEBI:16857 (2)
CHEBI:17053 (2)
CHEBI:18012 (2)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:16414 (2)
CHEBI:17191 (2)
CHEBI:16828 (2)
CHEBI:743019 (1)
CHEBI:178060 (1)
CHEBI:178059 (1)
CHEBI:46229 (1)
CHEBI:140999 (1)
CHEBI:27924 (1)
CHEBI:53455 (1)
CHEBI:9657 (1)

Metabolite Name

LysoPC 20:3 (2)
LysoPC 18:1 (2)
LysoPE 20:2 (2)
LysoPE 20:3 (2)
LysoPC 16:0 (2)
LysoPE 17:1 (2)
Linoleic acid (2)
LysoPC 18:0 (2)
LysoPC 18:2 (2)
LysoPE 20:4 (2)
LysoPE 18:1 (2)
LysoPE 16:0 (2)
Gamma-aminobutyric acid (2)
Stearic acid (2)
Palmitic acid (2)
Glycine (2)
Ethanolamine (2)
4-hydroxybenzoic acid (2)
Fumaric acid (2)
Myo-inositol (2)
Malic acid (2)
Argininosuccinic acid (2)
ADP (2)
LysoPE 18:2 (2)
LysoPE 18:0 (2)
NADH (2)
Trans-13-docosenoic acid (1)
Trans-11-eicosenoic acid (1)
Trans-10-heptadecenoic acid (1)
Cis-10-heptadecanoic acid (1)

First Public Date

2014 (44)
2024 (39)
2023 (36)
2025 (28)
2022 (22)
2021 (21)
2020 (18)
2026 (15)
2019 (14)
2018 (14)
2013 (13)
2016 (10)
2017 (8)
2015 (4)

Classification

helminths (3)

Study type

Transcription profiling by array (252)
RNA-seq of coding RNA (58)
ChIP-seq (50)
Methylation profiling by array (12)
ChIP-chip by tiling array (8)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (6)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
ChIP-chip by array (2)
CUT&RUN (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Animal - Single-cell sequencing (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
ATAC-seq (1)
Ribo-seq (1)
DNA-seq (1)

Release Date

2014 (101)
2015 (83)
2022 (81)
2023 (78)
2020 (74)
2012 (74)
2021 (73)
2013 (70)
2010 (57)
2025 (55)
2011 (52)
2016 (50)
2017 (50)
2018 (49)
2019 (48)
2024 (43)
2008 (32)
2009 (29)
2007 (20)
2006 (9)
2026 (8)
2005 (5)
2004 (5)
2003 (4)
2000 (3)
2002 (2)
2001 (2)

Lab affiliation

Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (6)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Shandong Agricultural University (2)
Cancer Research UK Cambridge Institute University of Cambridge United Kingdom (1)
Centro de Investigacion Cientifica de Yucatan (1)
Departament of Byossistems, KULeuven, Leuven 3000, Belgium (1)
Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil. (1)
Department of Forestry Science, NEIKER, Arkaute, Spain. (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Dr.S. UMA Director, National Research Centre for Banana Trichy, Tamil Nadu, India (1)
Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center SAS (1)
Instituto de Ecologia, A.C. (INECOL). Red de Estudios Moleculares Avanzados (1)
Laboratório de Biotecnologia Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (1)
MED—Mediterranean Institute for Agriculture, Environment and Development & CHANGE—Global Change and Sustainability Institute, School of Science and Technology, University of Évora, Pólo da Mitra, Ap. 94, 7002-554 Évora, Portugal (1)
Plateforme Proteome, Centre Genomique Fonctionnelle Bordeaux, Bordeaux, France (1)
Research Institute of Molecular Pathology (IMP), Austria (1)
Smurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland. (1)
Unidad de Biología Integrativa, Centro de Investigación Científica de Yucatán, Calle 43, No. 130 Colonia Chuburná de Hidalgo, Mérida CP 97200, Yucatán, México. (1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France. (1)
Universidad Nacional Autonoma de Mexico, Facultad de Quimica (1)
University of Bordeaux, Center of Functionnal Genomics, Proteome Platform (1)

Previous page
1 / 168
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 168
Next page

Sort by:

Relevance

Page size

Transcription profiling of Cyclamen persicum zygotic embryo, callus and somatic embryo

The goal of the experiment was to investigate impact of the apoplast on somatic embryogenesis in Cyclamen persicum

ORGANISM(S): Cyclamen persicum

2010-04-20 | E-TABM-837 | biostudies-arrayexpress

Stage-specific protein regulation during somatic embryo development of Carica papaya L. ‘Golden’

Somatic embryogenesis is an important biotechnological technique for large-scale propagation of elite genotypes. Correlations of stage-specific compounds associated with somatic embryo development can help elucidate the ontogenesis of Carica papaya L. somatic embryos and improve tissue culture proto...

ORGANISM(S): Carica papaya

2020-11-12 | PXD021107 | Pride

Repetitive somatic embryogenesis induced cytological and proteomic changes in propagated embryogenic lines of Pseudotsuga menziesii [Mirb.]

Objectives: to characterize and to better understand changes at the cellular and molecular levels, in embryogenic lines in Douglas-fir obtained after repetitive somatic embryogenesis, that could explain improvement of their embryogenic potential : to primary lines, secondary ones showed an increase ...

ORGANISM(S): Pseudotsuga menziesii

2018-08-15 | PXD008347 | Pride

Plant growth regulators Embryogenesis induction Douglas-fir Somatic embryogenesis

Potential link between biotic defense activation and recalcitrance to induction of somatic embryogenesis in shoot primordia from adult trees of white spruce (Picea glauca)

The goal is to examine the molecular aspects underpinning somatic embryogenesis (SE) within shoot tissues of adult white spruce trees by conducting transcriptome-wide expression profiling of shoot explants taken from responsive and nonresponsive genotypes. One-color analysis of vegetative buds in so...

ORGANISM(S): Picea glauca

2013-10-17 | E-GEOD-46977 | biostudies-arrayexpress

Acquisition of embryogenic competence during protoplast development of Fagopyrum

Reprogramming in protoplast cultures is a key step for acquiring embryogenic competence by dedifferentiated cells, thus leading to plant regeneration. Therefore, to better understand factors trigging the processes, this work focuses on analysing proteomes, cell wall composition and changes in the ex...

ORGANISM(S): Fagopyrum Esculentum (ncbitaxon:3617) Fagopyrum Tataricum (ncbitaxon:62330)

MSV000095861 | MassIVE

Molecular analysis of somatic embryogenesis through proteomic approach and optimization of protocol in recalcitrant Musa spp.

Somatic embryogenesis (SE) is a complex stress related process regulated by numerous biological factors. SE is mainly applicable to mass propagation and genetic improvement of plants through gene transfer technology and mutation breeding. In banana, SE is highly genome dependent as the efficiency va...

ORGANISM(S): Musa acuminata subsp. malaccensis

2019-03-19 | PXD011392 | Pride

Somatic embryogenesis Maldi tof ms Banana 2de proteomics

embryogenesis col0-somatic embryogenesis

gnp07_regeneome_embryogenesis - embryogenesis col0 - Identify genes involved in somatic embryogenesis - compare embryogenic areas of a callus with undifferenciate area in the same callus 4 dye-swap - tissue comparison

ORGANISM(S): Arabidopsis thaliana

2012-05-31 | E-GEOD-30425 | biostudies-arrayexpress

embryogenesis ws-somatic embryogenesis

gnp07_regeneome_embryogenesis - embryogenesis ws - Identify genes involved in somatic embryogenesis - To compare embryogenic areas of a callus with undifferenciate area in the same callus 3 dye-swap - tissue comparison

ORGANISM(S): Arabidopsis thaliana

2012-05-31 | E-GEOD-30383 | biostudies-arrayexpress

embryogenesis ws-somatic embryogenesis

ORGANISM(S): Arabidopsis thaliana

2013-04-11 | E-GEOD-45940 | biostudies-arrayexpress

Somatic embryogenesis of Pinus nigra

There are several issues complicating somatic embryogenesis in conifers, for instance the low initiation frequency, the weak maturation capacity, and the loss of an embryogenic potential after a prolonged cultivation. The aim of our study was to clarify molecular details of the this process in the t...

ORGANISM(S): Pinus nigra

2017-09-06 | PXD004611 | Pride

Cell wall biosynthesis conifers embryogenic tissue loss of maturation capacity non-embryogenic callus 2-d gel electrophoresis

Previous page
1 / 168
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 168
Next page

Sort by:

Relevance

Page size

1678 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets