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ProteomicsAutomated identification of the Cowpox virus (Brighton Red) strain in HEp-2 cells using nLC-MS/MS spectra
Accompanying benchmarking sample for "TaxIt: An iterative computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic single-organism samples": Untargeted accurate strain-level classification of a priori unidentified organisms using tandem mass spectrometry...
ORGANISM(S): Homo sapiens (Human) Cowpox virus (Brighton Red) 
2020-05-11 | PXD014913 | Pride
Cowpox virus (brighton red) Human Nlc-ms/ms 
MetabolomicsUncovering the Complexity of the Yeast Lipidome by Means of nLC/NSI-MS/MS
Saccharomyces cerevisiae is a eukaryotic model organism widely used for the investigation of fundamental cellular processes and disease mechanisms. Consequently, the lipid landscape of yeast has been extensively investigated and up to this day the lipidome is considered as rather basic. Here, we use...
2021-01-08 | MTBLS2119 | MetaboLights
MetabolomicsUntargeted metabolomics links glutathione to bacterial cell cycle progression
Cell cycle progression requires the coordination of cell growth, chromosome replication, and division. Consequently, a functional cell cycle must be coupled with metabolism. However, direct measurements of metabolome dynamics remained scarce, in particular in bacteria. Here, we describe an untargete...
2020-10-15 | MTBLS1402 | MetaboLights
ProteomicsLabeled quantitative proteomics dataset of optogenetics induced axon regeneration
This labeled quantitative proteomics dataset was collected from a transgenic channel rhodopsin mouse model (Chr2) subjected to light stimulation after traumatic optic nerve crush (ONC) was performed. Mouse models expressing channel rhodopsin were subjected to therapeutic light stimulation promoting ...
ORGANISM(S): Mus musculus (Mouse) 
2022-08-12 | PXD032788 | Pride
Rhythmic light stimulation Quantitative proteome Axon regeneration Optogenetic stimulation 
UnknownComparative Untargeted Metabolic Profiling of Different Parts of Citrus sinensis Fruits via Liquid Chromatography-Mass Spectrometry Coupled with Multivariate Data Analyses to Unravel Authenticity.
Not available
S-EPMC9914239 | biostudies-literature
UnknownPlasma Proteomic Analysis Reveals the Potential Role of Lectin and Alternative Complement Pathways in IgA Vasculitis Pathogenesis.
Not available
S-EPMC10217085 | biostudies-literature
UnknownLabeled quantitative proteomics dataset of optogenetics induced axon regeneration in mice.
Not available
S-EPMC9167879 | biostudies-literature
ProteomicsSystemic effects of hemorrhagic snake venom metalloproteinases: untargeted peptidomics to explore the pathodegradome of plasma proteins
In this study we investigated the proteolysis of human plasma proteins by HF3, an hemorrhagic metalloproteinase from B. jararaca venom. For this purpose, approaches for the depletion of the most abundant proteins and for the enrichment of low abundant proteins of human plasma were used to minimize t...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD027997 | Pride
Bothrops  snake venom  hemorrhagic factor 3 (hf3)  human plasma  degradome 
UnknownMulti-omics profiling of CSF from spinal muscular atrophy type 3 patients after nusinersen treatment: a 2-year follow-up multicenter retrospective study.
Not available
S-EPMC10404194 | biostudies-literature
ProteomicsDifferentiation of wheat high-molecular-weight glutenin subunits
High-molecular-weight glutenin subunits (HMW-GS) play an essential role in the end-use quality of wheat (Triticum aestivum L.). We developed a targeted liquid chromatography-tandem mass spectrometry method in parallel reaction monitoring (LC-MS/MS-PRM) to detect and differentiate wheat HMW-GS in Ger...
ORGANISM(S): Triticum aestivum (Wheat) 
2026-09-10 | PXD058934 | Pride
Hmw-gs  triticum aestivum l.  wheat proteomics  untargeted nlc-ms/ms  parallel reaction monitoring 
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