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ProteomicsComparison of DIA and TMT based protein quantification in complex background
Label free quantification (LFQ) and isobaric labelling quantification (ILQ) are among the most popular protein quantification workflows in discovery proteomics. Here, we compared the TMT 10-plex workflow to label free single shot data-independent acquisition (DIA) method on a controlled sample set. ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-01-29 | MSV000084859 | MassIVE
ProteomicsTMT-based proteomics analysis of mouse germ cells
The proteome changes were quantified in RibosomeRPL39L-/- spermatocytes and elongated spermatids using TMT 6-plex, and in spermatogonia, spermatocytes, round spermatids and elongated spermatids using TMT 10-plex by LC-MS/MS.
ORGANISM(S): Mus musculus (Mouse) 
2022-10-05 | PXD020874 | Pride
Germ cells Tmt Mouse 
UnknownDeep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric Labeling.
Not available
S-EPMC5336479 | biostudies-literature
ProteomicsTMT-based proteomics and phosphoproteomics analysis of proteome changes in seminal plasma extracellular vesicles of azoospermia
The proteome and phosphoproteomics changes were quantified in seminal plasma extracellular vesicles among healthy individuals with normal sperm, nonobstructive azoospermia and obstructive azoospermia using TMT 10-plex by LC-MS/MS.
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD022843 | Pride
Tmt  azoospermia  extracellular vesicles  seminal plasma  proteomics 
ProteomicsThe baseline vitreous proteome in rhegmatogenous retinal detachment: a case–control study of proliferative vitreoretinopathy
Quantitative proteomic analysis of undiluted human vitreous biopsies collected at the time of primary surgical repair of rhegmatogenous retinal detachment (RRD), comparing patients who later developed proliferative vitreoretinopathy (PVR; n=8) with matched RRD controls who did not (n=8). Vitreous sa...
ORGANISM(S): Homo sapiens (Human) 
2026-05-05 | PXD077831 | Pride
Pvr Tmt-10-plex Proteomics Vitreous Ocular Retinal detachment Biomarker Proliferative vitreoretinopathy 
ProteomicsBenefits of FAIMS to improve the proteome coverage of hard-to-analyze TMT 10-plex FFPE tissue and plasma-derived exosomes samples
The analysis of complex protein mixtures, such as FFPE tissue or plasma exosomes samples, is a challenge nowadays due to the low proteome coverage achieved by mass spectrometers nowadays. We have here investigated the benefits of FAIMS technology coupled to the Orbitrap Exploris 480 mass spectromete...
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD042601 | Pride
Orbitrap exploris 480 Mass spectrometry Proteomics Faims Ffpe tissue Exosomes 
ProteomicsBenefits of FAIMS to improve the proteome coverage of hard-to-analyze TMT 10-plex FFPE tissue and plasma-derived exosomes samples
The analysis of complex protein mixtures, such as FFPE tissue or plasma exosomes samples, is a challenge nowadays due to the low proteome coverage achieved by mass spectrometers nowadays. We have here investigated the benefits of FAIMS technology coupled to the Orbitrap Exploris 480 mass spectromete...
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD042597 | Pride
Orbitrap exploris 480 Mass spectrometry Proteomics Faims Ffpe tissue Exosomes 
ProteomicsBenefits of FAIMS to improve the proteome coverage of hard-to-analyze TMT 10-plex FFPE tissue and plasma-derived exosomes samples
The analysis of complex protein mixtures, such as FFPE tissue or plasma exosomes samples, is a challenge nowadays due to the low proteome coverage achieved by mass spectrometers nowadays. We have here investigated the benefits of FAIMS technology coupled to the Orbitrap Exploris 480 mass spectromete...
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD042596 | Pride
Orbitrap exploris 480 Mass spectrometry Proteomics Faims Ffpe tissue Exosomes 
ProteomicsBenefits of FAIMS to improve the proteome coverage of deteriorated, and/or cross-linked TMT 10-plex FFPE tissue and plas-ma-derived exosomes samples
The analysis of complex protein mixtures, such as FFPE tissue or plasma exosomes samples, is a challenge nowadays due to the low proteome coverage achieved by mass spectrometers nowadays. We have here investigated the benefits of FAIMS technology coupled to the Orbitrap Exploris 480 mass spectromete...
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD045367 | Pride
Orbitrap exploris 480 Mass spectrometry Proteomics Faims Ffpe tissue Exosomes 
ProteomicsBenefits of FAIMS to improve the proteome coverage of deteri-orated, and/or cross-linked TMT 10-plex FFPE tissue and plas-ma-derived exosomes samples
The analysis of complex protein mixtures, such as FFPE tissue or plasma exosomes samples, is a challenge nowadays due to the low proteome coverage achieved by mass spectrometers nowadays. We have here investigated the benefits of FAIMS technology coupled to the Orbitrap Exploris 480 mass spectromete...
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD045362 | Pride
Orbitrap exploris 480 Mass spectrometry Proteomics Faims Ffpe tissue Exosomes 
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