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Unknown
(3332444)
Genomics
(1192258)
Transcriptomics
(287377)
Proteomics
(67148)
Other
(17201)
Clinical
(10579)
Metabolomics
(10294)
Methylation profiling
(9095)
Models
(4679)
Genomic
(1316)
Multiomics
(464)
Microarray
(40)
Flow cytometry
(1)
Organisms
Homo sapiens
(191754)
Mus musculus
(125461)
Arabidopsis thaliana
(10607)
Rattus norvegicus
(10073)
Drosophila melanogaster
(9733)
Saccharomyces cerevisiae
(6672)
Escherichia coli
(2083)
Schizosaccharomyces pombe
(1591)
Canis lupus familiaris
(856)
Plasmodium falciparum
(548)
Xenopus laevis
(506)
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(501)
cellular organisms
(403)
Bacillus subtilis
(355)
Oryctolagus cuniculus
(303)
Neurospora crassa
(199)
Trypanosoma brucei
(131)
Saccharomyces cerevisiae S288C
(106)
Rattus
(103)
Severe acute respiratory syndrome coronavirus 2
(103)
Mammalia
(98)
Cavia porcellus
(87)
Arabidopsis
(64)
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(29)
Viridiplantae
(18)
Metazoa
(15)
Chordata
(11)
Murinae
(10)
Mus sp.
(8)
Vertebrata
(5)
Organisms
Homo sapiens
(125602)
Mus musculus
(93249)
soil metagenome
(18018)
Sorghum bicolor
(9218)
Panicum virgatum
(9079)
Arabidopsis thaliana
(8459)
Populus trichocarpa
(8163)
Rattus norvegicus
(7011)
Escherichia coli
(6959)
Oryza sativa
(6121)
Zea mays
(4945)
Drosophila melanogaster
(4695)
Saccharomyces cerevisiae
(4659)
marine metagenome
(4374)
Brachypodium distachyon
(3677)
Klebsiella pneumoniae
(3617)
seawater metagenome
(3415)
Danio rerio
(3327)
hot springs metagenome
(3228)
Neurospora crassa
(2982)
freshwater metagenome
(2875)
sediment metagenome
(2855)
groundwater metagenome
(2620)
Staphylococcus aureus
(2587)
rhizosphere metagenome
(2555)
Panicum hallii
(2478)
Caenorhabditis elegans
(2356)
lake water metagenome
(2355)
Sus scrofa
(2352)
Bos taurus
(2216)
Repository
ENA
(1095193)
geo
(298041)
biostudies-arrayexpress
(80953)
pride
(41886)
EGA
(18672)
MassIVE
(9931)
iProX
(8087)
NODE
(7865)
ExpressionAtlas
(4561)
GNPS
(4390)
MetaboLights
(3500)
jPOST
(3161)
BioModels
(2795)
PeptideAtlas
(2294)
MetabolomicsWorkbench
(2168)
dbGaP
(1316)
PMR
(1225)
EVA
(1021)
PAXDB
(960)
PanoramaPublic
(475)
LINCS
(447)
FAIRDOMHub
(418)
GPMDB
(375)
Cell Collective
(241)
Tissue
Brain
(2312)
Liver
(1559)
Blood
(1214)
Leaf
(938)
Skin
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Kidney
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Heart
(838)
Lung
(838)
Root
(446)
Bone marrow
(384)
Pancreas
(60)
Testis
(39)
Spleen
(36)
Cerebellum
(29)
Ovary
(27)
Shoot
(26)
Skeletal muscle tissue
(24)
Ileum
(21)
Seed
(20)
Endosperm
(19)
Hippocampus
(19)
Stomach
(17)
Duodenum
(16)
Adrenal gland
(16)
Lymph node
(15)
Plant embryo
(15)
Cerebral cortex
(15)
Flower
(14)
Uterus
(13)
Disease
Breast cancer
(931)
Normal
(744)
Alzheimer's disease
(306)
Parkinson's disease
(202)
Melanoma
(192)
Glioblastoma
(132)
Non-small cell lung carcinoma
(117)
Hepatocellular carcinoma
(115)
Lung adenocarcinoma
(99)
Acute myeloid leukemia
(33)
Diabetes mellitus
(31)
Breast carcinoma
(23)
Alzheimers disease
(21)
Crohn's disease
(20)
None
(19)
Control
(16)
Rheumatoid arthritis
(15)
Squamous cell carcinoma
(14)
Ulcerative colitis
(13)
Asthma
(13)
Glioblastoma multiforme
(13)
Breast adenocarcinoma
(12)
Invasive ductal carcinoma
(12)
Glioma
(10)
Pancreatic adenocarcinoma
(7)
Squamous cell lung carcinoma
(7)
Rheumatoid factor-negative juvenile idiopathic arthritis
(6)
Gastric adenocarcinoma
(6)
Ovarian adenocarcinoma
(6)
Esophageal adenocarcinoma
(6)
Technology Type
Illumina HiSeq 2000
(377)
ILLUMINA, Illumina HiSeq 2000
(56)
Illumina HiSeq 2500
(56)
Illumina Genome Analyzer II
(49)
Illumina HiSeq 2000, ILLUMINA
(47)
Illumina MiSeq
(45)
ILLUMINA, Illumina HiSeq 2500
(44)
Illumina HiSeq 2500, ILLUMINA
(41)
Illumina
(41)
Illumina HiSeq 2500 (ILLUMINA)
(24)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(24)
HiSeq X Ten
(13)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(13)
Unknown, Affymetrix 500K
(11)
HiSeq X Ten, ILLUMINA
(10)
ILLUMINA, Illumina MiSeq
(10)
Illumina HiSeq 2500, Illumina HiSeq 2000
(10)
Illumina MiSeq, ILLUMINA
(9)
ILLUMINA, NextSeq 500
(9)
ILLUMINA, HiSeq X Ten
(8)
Illumina 15K
(8)
Illumina HiSeq 4000, ILLUMINA
(7)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000
(7)
Affymetrix 500K, unknown
(6)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500
(5)
Illumina HiSeq 2000, Illumina HiSeq 2500
(5)
AB SOLiD 4 System
(5)
Unknown
(5)
Complete Genomics, COMPLETE_GENOMICS
(4)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten
(4)
Instrument Platform
Illumina NovaSeq 6000
(2334)
NextSeq 500
(1558)
Illumina HiSeq 2000
(1547)
Illumina HiSeq 2500
(1514)
Illumina HiSeq 4000
(1064)
Illumina MiSeq
(392)
NextSeq 550
(373)
NextSeq 2000
(254)
Illumina NovaSeq X
(238)
Illumina HiSeq 1500
(187)
Illumina Genome Analyzer II
(174)
Illumina Genome Analyzer IIx
(169)
BGISEQ-500
(149)
Illumina HiSeq 3000
(131)
HiSeq X Ten
(117)
DNBSEQ-T7
(85)
DNBSEQ-G400
(84)
Illumina HiSeq 1000
(77)
Scanning hardware
(72)
NA
(60)
GenePix 4000B [Axon Instruments]
(58)
Ion Torrent Proton
(58)
Axon GenePix 4000B scanning hardware
(50)
Axon- GenePix4000B
(41)
MinION
(38)
N/A
(36)
AB SOLiD 4 System
(35)
GenePix 4000A [Axon Instruments]
(34)
418 [Affymetrix]
(32)
PromethION
(30)
Publication Date
2025
(41283)
2024
(39125)
2026
(37117)
2023
(34608)
2021
(33450)
2022
(33411)
2020
(25672)
2016
(22031)
2019
(21717)
2015
(21525)
2014
(21003)
2013
(19740)
2017
(18994)
2018
(18336)
2012
(16108)
2011
(14381)
2010
(14031)
2008
(7911)
2009
(7745)
2007
(4721)
2005
(2811)
2006
(2567)
2004
(1168)
2003
(598)
2002
(117)
2001
(17)
2027
(8)
UNIPROT ID/AC
Q9NY65
(1071)
P30613
(76)
P00338
(75)
P06744
(75)
P05062
(74)
P04075
(74)
P07195
(74)
P21399
(74)
P14618
(73)
P09972
(72)
P07864
(72)
Q15181
(71)
P09622
(71)
Q01581
(71)
P00390
(70)
P37268
(70)
Q99714
(70)
P09417
(70)
Q01959
(70)
Q9UHI5
(70)
Q9NS82
(70)
O95477
(70)
Q9BYZ2
(70)
P30838
(70)
P05091
(70)
P17174
(70)
P36969
(70)
Q9NQ66
(70)
Q99798
(70)
Q16836
(70)
ENSEMBL ID
ENSG00000064012
(4)
ENSG00000077150
(4)
ENSG00000165661
(4)
ENSG00000176654
(4)
ENSG00000204531
(4)
ENSG00000141510
(4)
ENSG00000135679
(4)
ENSG00000149968
(3)
ENSG00000100906
(3)
ENSG00000101017
(3)
ENSG00000184588
(2)
ENSG00000179295
(2)
ENSG00000182580
(2)
ENSG00000171862
(2)
ENSG00000140443
(2)
ENSG00000146648
(2)
ENSG00000169032
(2)
ENSG00000105639
(2)
ENSG00000076984
(2)
ENSG00000105397
(2)
ENSG00000073756
(2)
ENSG00000108984
(2)
ENSG00000120875
(2)
ENSG00000141506
(2)
ENSG00000151552
(2)
ENSG00000142319
(2)
ENSG00000093010
(2)
ENSG00000180176
(2)
ENSG00000111275
(2)
ENSG00000112062
(2)
CHEBI ID
CHEBI:15428
(801)
CHEBI:16335
(733)
CHEBI:17268
(619)
CHEBI:17895
(607)
CHEBI:17754
(596)
CHEBI:16857
(561)
CHEBI:17203
(560)
CHEBI:18050
(547)
CHEBI:16828
(542)
CHEBI:17191
(540)
CHEBI:15971
(526)
CHEBI:16761
(525)
CHEBI:16977
(514)
CHEBI:16643
(510)
CHEBI:17115
(503)
CHEBI:16680
(459)
CHEBI:15422
(428)
CHEBI:16526
(296)
CHEBI:15343
(287)
CHEBI:15379
(267)
CHEBI:18021
(266)
CHEBI:16240
(261)
CHEBI:15377
(261)
CHEBI:29033
(259)
CHEBI:16236
(259)
CHEBI:17411
(251)
CHEBI:29034
(250)
CHEBI:15414
(247)
CHEBI:17561
(246)
CHEBI:16349
(246)
Metabolite Name
Hypoxanthine
(569)
Creatine
(530)
Taurine
(507)
Adenosine
(504)
Uridine
(497)
Adenine
(496)
Uracil
(485)
Creatinine
(475)
Inosine
(473)
Choline
(441)
L-Phenylalanine
(441)
Guanosine
(429)
L-Tyrosine
(429)
Xanthine
(420)
Betaine
(407)
Cytidine
(386)
L-Tryptophan
(384)
Guanine
(380)
L-Histidine
(379)
Citric acid
(377)
Cytosine
(367)
L-Proline
(356)
Glycine
(346)
L-Glutamine
(344)
L-Valine
(338)
Azelaic acid
(337)
Ornithine
(334)
Pantothenic acid
(329)
Thymine
(327)
Riboflavin
(324)
First Public Date
2025
(139389)
2024
(122582)
2026
(104768)
2023
(98223)
2022
(83717)
2019
(76459)
2021
(76323)
2020
(75504)
2014
(66336)
2018
(64785)
2017
(60240)
2013
(59285)
2016
(35915)
2015
(30190)
2012
(901)
2011
(312)
2010
(264)
Modelling Approach
Ordinary differential equation model
(1694)
Constraint-based model
(345)
Other
(61)
Computational model
(40)
Logical model
(36)
Population model
(26)
Differential equation model
(25)
Machine learning
(23)
Mathematical model
(17)
Petri net
(14)
Delayed differential equation model
(14)
Boolean model
(13)
Physiologically based pharmacokinetic model
(11)
Metabolic network
(11)
Agent-based model
(8)
Cellular potts model
(5)
Partial differential equation model
(5)
Stochastic differential equation model
(4)
Deep learning
(3)
Finite element spatial model
(3)
Steady-state model
(3)
Dynamical characteristic
(2)
Spatial characteristic
(2)
Differential algebraic equation model
(2)
Pharmacodynamics model
(2)
Markov model
(1)
Fuzzy logic model
(1)
Neural network
(1)
Support-vector machine
(1)
Random forest procedure
(1)
Study status
Completed
(4444)
Recruiting
(2417)
Not yet recruiting
(1109)
Not provided
(979)
Active, not recruiting
(629)
Terminated
(592)
Withdrawn
(184)
Ongoing
(136)
Enrolling by invitation
(41)
Suspended
(32)
No longer available
(7)
Other
(6)
Available
(2)
Approved for marketing
(1)
Lab affiliation
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(139)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(130)
EDyP
(103)
Head of the Curie Institute Mass Spectrometry Platform
(86)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
(78)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(73)
Proteomics
(69)
Wageningen University
(69)
Pacific Northwest National Laboratory
(63)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(60)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States
(60)
University of Edinburgh
(57)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
(55)
The University of Melbourne
(55)
Head of Proteomics
(50)
University of Victoria
(49)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(48)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(45)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States
(43)
Cellzome
(42)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(41)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(36)
Utrecht University
(36)
Cornell University
(35)
University of Oxford
(34)
University Hospital Cologne
(33)
Vanderbilt University
(33)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(32)
Functional Proteomics, ICR
(32)
Proteomics facility, Central Science Laboratory, University of Tasmania
(32)
Tags
pathogen
(88871)
pathogen:bacterium
(71291)
pathogen:fungus
(10041)
pathogen:virus
(4373)
pathogen:protozoan
(2677)
covid19
(1384)
xref:PubMed:29069476
(1221)
wastewater
(996)
xref:PubMed:35732736
(686)
xref:PubMed:34387940
(686)
xref:PubMed:33911273
(679)
pathogen:helminth
(489)
xref:PubMed:23851394
(223)
xref:PubMed:30478043
(188)
xref:PubMed:28343967
(135)
xref:PubMed:22955616
(125)
xref:PubMed:31696235
(121)
xref:PubMed:38846925
(118)
xref:PubMed:31740605
(113)
xref:PubMed:15656970
(105)
xref:PubMed:25378627
(104)
xref:PubMed:34830319
(102)
xref:PubMed:40265171
(101)
xref:PubMed:37165242
(100)
xref:PubMed:24158624
(99)
xref:PubMed:34616061
(94)
xref:PubMed:25840857
(93)
xref:PubMed:36405343
(92)
xref:PubMed:41379974
(92)
xref:PubMed:18337718
(91)
Keyword
Oxaliplatin
(610)
Irinotecan
(559)
Fluorouracil
(532)
Leucovorin
(524)
Bevacizumab
(490)
Capecitabine
(383)
Cetuximab
(370)
Levoleucovorin
(321)
Stage IV colon cancer
(319)
Recurrent colon cancer
(286)
Stage IV rectal cancer
(286)
Recurrent rectal cancer
(261)
Calcium
(187)
Colonoscopy
(182)
Adenocarcinoma of the rectum
(177)
Adenocarcinoma of the colon
(165)
Stage III colon cancer
(160)
Stage III rectal cancer
(157)
Pembrolizumab
(144)
Colorectal
(138)
Panitumumab
(134)
Antibodies, Monoclonal
(121)
Metastatic
(118)
Antibodies
(115)
Nivolumab
(110)
Chemotherapy
(105)
Screening
(91)
Stage II rectal cancer
(90)
Folic Acid
(88)
CRC
(88)
IsPrivate
False
(2795)
Model Flag
Non Kinetic
(517)
Non Miriam
(18)
Sbml Extended
(3)
Submitter Keywords
Immuno-oncology
(124)
FROG
(89)
Machine Learning Model
(87)
Ersilia
(56)
Not Peer Reviewed
(56)
FAIR-AIML
(55)
COVID-19
(28)
TransQST
(10)
Manuscript Accepted
(9)
Oncology
(5)
Classification
bacteria
(71291)
fungi
(10041)
viruses
(4373)
protozoa
(2677)
helminths
(489)
Modification
Not available
(318)
15.994915
(228)
57.021464
(205)
4x(15)N labeled L-arginine
(100)
2x(15)N labeled L-lysine
(94)
42.010565
(92)
4-tetrahydrothiazine-3-carboxylic acid
(65)
N6
(65)
-17.026549
(64)
N6-dimethyl-L-lysine
(43)
0.984016
(36)
79.966331
(31)
-18.010565
(30)
45.029395
(18)
4
(17)
58.005479
(16)
6.020129
(16)
4x(2)H labeled dimethylated residue
(15)
+3amu)
(12)
10.008269
(12)
56.026215
(11)
15.99491
(9)
31.989829
(9)
45.987721
(9)
57.02146
(9)
144.102062
(8)
59.036279
(8)
27.994915
(7)
6x(2)H labeled dimethylated L-arginine
(7)
71.037114
(7)
Study type
Transcription profiling by array
(47558)
RNA-seq of coding RNA
(10999)
ChIP-seq
(4953)
Comparative genomic hybridization by array
(1968)
RNA-seq of non coding RNA
(1616)
Methylation profiling by array
(1496)
Unknown experiment type
(1481)
ChIP-chip by tiling array
(1394)
RNA-seq of coding RNA from single cells
(1143)
Other
(1115)
Methylation profiling by high throughput sequencing
(816)
DNA-seq
(701)
Genotyping by array
(484)
RNA-seq of total RNA
(479)
Transcription profiling by tiling array
(453)
ChIP-chip by array
(451)
MicroRNA profiling by array
(373)
Transcription profiling by RT-PCR
(321)
Cell line - High-throughput sequencing
(315)
Animal - High-throughput sequencing
(241)
Proteomic profiling by array
(193)
Transcription profiling by SAGE
(190)
ATAC-seq
(182)
High-throughput sequencing
(157)
RNAi profiling by array
(150)
Human - High-throughput sequencing
(116)
Genotyping by high throughput sequencing
(108)
MicroRNA profiling by high throughput sequencing
(96)
Animal - One-color microarray
(74)
Plant - High-throughput sequencing
(72)
Release Date
2022
(388634)
2025
(358743)
2023
(348619)
2021
(336793)
2024
(309232)
2020
(268118)
2019
(209718)
2018
(184506)
2017
(156805)
2016
(143160)
2015
(124693)
2014
(107341)
2013
(80830)
2012
(70153)
2011
(60139)
2010
(52965)
2026
(52491)
2009
(40599)
2008
(33143)
2007
(20555)
2006
(16192)
2005
(12650)
2004
(8548)
2003
(6893)
2002
(5598)
2001
(4577)
2000
(4109)
1999
(3150)
1998
(2657)
1997
(847)
Location
United States
(2637)
China
(1863)
Japan
(1332)
France
(736)
United Kingdom
(722)
Germany
(608)
Spain
(587)
Italy
(584)
Australia
(498)
Netherlands
(476)
Canada
(455)
Belgium
(372)
South Korea
(360)
Denmark
(236)
India
(197)
Sweden
(178)
Austria
(177)
Taiwan
(174)
Poland
(165)
Israel
(129)
Czechia
(128)
Switzerland
(122)
Hungary
(112)
Brazil
(107)
Russia
(105)
Norway
(99)
Hong Kong
(94)
New Zealand
(91)
Greece
(91)
Turkey
(88)
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E-PROT-61
Proteomic Atlas of the Human Brain in Alzheimer's Disease
2021-05-25
|
E-PROT-61
|
ExpressionAtlas
Cite
E-PROT-81
The protein expression landscape of the heart across humans and model organisms
2022-01-14
|
E-PROT-81
|
ExpressionAtlas
Cite
E-PROT-54
Protein expression in the dorsolateral prefrontal cortex brain samples from the Baltimore Longitudinal Study of Aging (BLSA)
2022-01-10
|
E-PROT-54
|
ExpressionAtlas
Cite
E-ENAD-33
Mapping regulatory variation in sensory neurons using IPS lines from the HIPSCI project
2020-02-06
|
E-ENAD-33
|
ExpressionAtlas
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E-MTAB-5986
RNA-Seq analysis of mouse dopamine neurons identifies transcriptional repression of PlexinC1 by Lmx1a and Lmx1b
2019-05-14
|
E-MTAB-5986
|
ExpressionAtlas
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E-MEXP-3711
Transcription profiling of plasma cells and plasmablasts from patients with primary immune thrombocytopenia after rituximab treatment compared to treatment naïve patients or healthy donors
2025-01-22
|
E-MEXP-3711
|
ExpressionAtlas
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E-MTAB-11531
A shared gene expression signature in human blastocyst embryos affected by a mitochondrial defect.
2025-07-08
|
E-MTAB-11531
|
ExpressionAtlas
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E-MTAB-10582
RNA-seq from tibialis muscles from rats aged 15 months (adult) and 27 months (old)
2023-06-15
|
E-MTAB-10582
|
ExpressionAtlas
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E-MTAB-4644
Transcription profiling by high throughput sequencing of mouse brain, heart, kidney, liver, lung, skeletal muscle organ, spleen and testis
2016-05-13
|
E-MTAB-4644
|
ExpressionAtlas
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E-MTAB-3173
Transcriptome analysis of proliferative tissue of eight maize inbred lines
2019-05-15
|
E-MTAB-3173
|
ExpressionAtlas
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