Abp - OmicsDI

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Transcriptomics (930)
Unknown (509)
Proteomics (107)
Genomics (65)
Metabolomics (12)
Multiomics (3)

Organisms

Mus musculus (187)
Homo sapiens (158)
Rattus norvegicus (111)
Arabidopsis thaliana (85)
Saccharomyces cerevisiae (72)
Chlamydomonas reinhardtii (34)
Caenorhabditis elegans (30)
Trypanosoma brucei (16)
Drosophila melanogaster (14)
Schizosaccharomyces pombe (12)
Streptomyces venezuelae (12)
Danio rerio (11)
Folsomia candida (10)
Oryza sativa (9)
Rhizobium leguminosarum (7)
Bacillus amyloliquefaciens (7)
Hordeum vulgare (7)
Oncorhynchus mykiss (7)
Candida albicans (7)
Solanum tuberosum (6)
Escherichia coli K-12 (6)
Pimephales promelas (5)
Oryza sativa Japonica Group (5)
Escherichia coli (5)
Shewanella oneidensis MR-1 (4)
Trypanosoma brucei brucei (4)
Oryza sativa Indica Group (4)
Vibrio cholerae (4)
Glycine max (4)
Triticum aestivum (4)

Organisms

Caenorhabditis elegans (3)
Streptococcus gordonii str. Challis substr. CH1 (1)
Phytopseudomonas seleniipraecipitans (1)
Acinetobacter phage sp. (1)
Salmo salar (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (985)
pride (45)
MassIVE (35)
jPOST (14)
MetaboLights (12)
ENA (12)
iProX (11)
EGA (6)
geo (2)

Tissue

Lung (4)
Bone marrow (3)
Cell culture (3)
Macrophage (3)
Breast (2)
Cell suspension culture (2)
Colon (2)
Feces (2)
Liver (2)
Primary cell (2)
A-431 cell (1)
A-549 cell (1)
Astrocyte (1)
Blood (1)
Bone tissue (1)
Brain (1)
Epithelial cell (1)
Erythrocyte (1)
Gut (1)
Kidney (1)
Leaf (1)
Leukocyte (1)
Melanocyte (1)
Permanent cell line cell (1)
Plant cell (1)
Root (1)
Shoot (1)
Skin cancer cell (1)
T cell (1)
Testis (1)

Disease

Normal (7)
Breast cancer (5)
Diabetes mellitus type 1 (1)
Not applicable (1)
Phyllodes tumor (1)
Colon cancer Dukes C (1)
Post-stasis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Cutaneous melanoma (1)
Hypertension (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Photoreceptor degeneration (1)
Infiltrating ductal carcinoma (1)
Chronic granulomatous disease (1)
Primary tumor (1)
IRAK-4 Q293X mutation (1)
Infected (1)
Invasive lobular carcinoma (1)
Non-infected (1)
IBDV infected (1)
Bordetella pertussis inoculated (1)
Head and neck squamous cell carcinoma (1)
Diabetes mellitus (1)
Chronic lymphocytic leukemia (1)
Chronic myelogenous leukemia (1)
Sarcoma (1)
Reference (1)
S enteritidis (1)
Prostate carcinoma (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (14)
Mass spectrometry assay (6)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Gel-based experiment (4)
Top-down proteomics (2)
NMR spectroscopy (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2000 (44)
NextSeq 500 (24)
Illumina NovaSeq 6000 (23)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (12)
NextSeq 550 (6)
Illumina Genome Analyzer IIx (4)
Illumina Genome Analyzer II (4)
AB SOLiD 4 System (3)
Nanostring GeoMx spatial profiler (2)
FS450 (2)
GCS3000 (2)
Other (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
G2565AA DNA microarray scanner [Agilent] (2)
GenePix 4000B [Axon Instruments] (2)
Scanning hardware (2)
NextSeq 2000 (2)
BGISEQ-500 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2000 platform (1)
10X chemistry 3' v3 (1)
Maxwell® AS2000 instrument (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
Aspara® Smart Grower Hydroponic (1)
10X genomics Chromium X (1)

Publication Date

2014 (117)
2013 (116)
2011 (99)
2010 (93)
2015 (91)
2012 (81)
2009 (64)
2008 (59)
2016 (57)
2023 (36)
2017 (35)
2018 (32)
2022 (29)
2026 (27)
2024 (27)
2007 (26)
2025 (23)
2021 (19)
2019 (19)
2006 (19)
2020 (13)
2005 (10)
2004 (7)

CHEBI ID

CHEBI:16135 (2)
CHEBI:15366 (2)
CHEBI:143591 (1)
CHEBI:143589 (1)
CHEBI:143588 (1)
CHEBI:143587 (1)
CHEBI:143584 (1)
CHEBI:144355 (1)
CHEBI:143583 (1)
CHEBI:143582 (1)
CHEBI:143580 (1)
CHEBI:144350 (1)
CHEBI:142657 (1)
CHEBI:143579 (1)
CHEBI:143578 (1)
CHEBI:143581 (1)
CHEBI:143586 (1)
CHEBI:143592 (1)
CHEBI:87527 (1)
CHEBI:144354 (1)
CHEBI:144356 (1)
CHEBI:143585 (1)
CHEBI:90332 (1)
CHEBI:136920 (1)
CHEBI:7747 (1)
CHEBI:18059 (1)
CHEBI:68889 (1)
CHEBI:133634 (1)
CHEBI:87494 (1)
CHEBI:66682 (1)

Metabolite Name

Thymine (5)
Serotonin (5)
Indole (5)
Choline (5)
Oleamide (5)
Adenosine (5)
Spermidine (5)
Sarcosine (5)
Creatine (5)
Glycerophosphocholine (5)
Agmatine (4)
3-Hydroxybenzaldehyde (4)
Histidine (4)
Allantoic acid (4)
Heptadecanoic acid (4)
3-methoxytyramine (4)
Valine (4)
Citrulline (4)
5'-Methylthioadenosine (4)
5-Hydroxy-L-tryptophan (4)
Butyric acid (4)
L-Homoserine (4)
Phytosphingosine (4)
Ergothioneine (4)
Ornithine (4)
L-Threonine (4)
Pyridoxine (4)
Homoarginine (4)
Pantothenic acid (4)
L-Kynurenine (4)

First Public Date

2026 (2)
2023 (2)
2022 (2)
2020 (2)
2014 (2)
2025 (1)
2018 (1)

Classification

viruses (1)
bacteria (1)

Study type

Transcription profiling by array (542)
RNA-seq of coding RNA (171)
ChIP-seq (43)
RNA-seq of non coding RNA (43)
ChIP-chip by tiling array (32)
Other (20)
Comparative genomic hybridization by array (17)
ChIP-chip by array (16)
RNA-seq of coding RNA from single cells (15)
Methylation profiling by array (13)
RIP-seq (10)
Unknown experiment type (8)
RNA-seq of total RNA (5)
High-throughput sequencing (4)
Transcription profiling by tiling array (4)
Spatial transcriptomics by high-throughput sequencing (3)
Human - High-throughput sequencing (2)
Plant - High-throughput sequencing (2)
Genotyping by array (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by array, ChIP-chip by array (1)
GRO-seq (1)
Transcription profiling by SAGE (1)
Plant - Two-color microarray (1)

Release Date

2014 (127)
2013 (126)
2011 (109)
2015 (100)
2012 (97)
2010 (97)
2016 (78)
2022 (77)
2024 (68)
2009 (67)
2023 (65)
2021 (64)
2008 (64)
2017 (60)
2020 (55)
2025 (52)
2018 (51)
2019 (40)
2007 (30)
2006 (22)
2026 (19)
2005 (11)
2004 (10)
1998 (2)
2001 (1)
1997 (1)
1979 (1)

Lab affiliation

Pacific Northwest National Laboratory (3)
Pacific Northwest National Laboratory, USA (3)
Department of Chemistry Center for Gastrointestinal Biology and Disease Integrated Program for Biological and Genome Sciences University of North Carolina at Chapel Hill (2)
The Bone Biology and Disease Laboratory, School of Biomedical Sciences, The University of Western Australia (2)
Aix-Marseille Univ, CNRS, LISM, IMM FR3479, 13009 Marseille, France (1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Assoc. Prof. Dr. Christian S. Lentz Associate Professor, Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Bio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands (1)
Biological and Environmental Science and Engineering Division, Center for Desert Agriculture, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia (1)
Biomolecular Mass Spectrometry and Proteomics (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, The Netherlands Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, University Utrecht, Utrecht, The Netherlands (1)
Boston College (1)
Department of Cell and Chemical Biology Leiden University Medical Centre Leiden, The Netherlands. (1)
Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London W12 0BZ, U.K. (1)
Department of Comparative Biochemistry and Bioanalytics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University in Krakow (1)
Department of Dermatology, Northwestern University, USA (1)
Department of Medical Biology, Health Faculty, UiT - The Arctic University of Norway, Norway. (1)
Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Department of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, Netherlands. (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (1)
INSERM IRSD U1220 CHU PURPAN PLACE DU DOCTEUR BAYLAC CS 60039 31024 TOULOUSE CEDEX 3 FRANCE (1)
Imperial College London (1)
Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria (1)
Instituto de Ecología, A.C. (1)
Internal Medicine (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, UK (1)
MRC Protein phosphorylation and ubiquitylation unit, University of Dundee (1)
Professor of Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Pharma Ltd Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (1)

1631 Results

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